- Basic information
- CohesinDB ID: CDBP00417509
- Locus: chr21-33839053-33840051
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Data sourse: GSE206145, GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116, HSPC, RPE
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 44%,
"4_Tx": 32%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, PAX7, GLIS1, ZNF425, MYCN, SIN3A, ZFX, ZNF600, HNF1A, GTF2B, WT1, ZBTB17, DUX4, FOXA1, CBX8, ERG3, DDX5, ERG2, SP4, PBX2, ZFHX2, ZNF300, ERG, YY1, PRDM10, KDM1A, RELA, TWIST1, CREBBP, THAP1, ZNF180, SP140, GRHL3, HIF1A, FOXK2, PRDM9, APC, MAX, TP63, NRIP1, ZNF143, ZNF320, NR3C1, KLF4, TEAD3, TFAP2C, NR2F1, TCF7L2, STAG1, KLF6, ESR1, KLF9, L3MBTL2, ZNF334, EGR2, CTCF, RBM22, SP1, KLF1, EP300, AR, ATF7, ASH2L, ZNF548, BRD4, JUND, MAZ, ZNF623, SMC3, MLLT1, AHR
- Target gene symbol (double-evidenced CRMs): CRYZL1,ITSN1,AP000311.1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 1
- Related genes and loops