- Basic information
- CohesinDB ID: CDBP00417511
- Locus: chr21-33842034-33843688
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Data sourse: ENCSR230ZWH, GSE67783, GSE86191, GSE98367, GSE206145-NatGen2015, GSE55407, GSE120943, ENCSR153HNT, GSE111537, ENCSR917QNE
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Cell type: Fibroblast, HCT-116, Monocytes, THP-1, K-562, Liver, OCI-AML-3, HSPC, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: Mau2,SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 46%,
"7_Enh": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, PAF1, ZFX, SP140, WT1, ZBTB48, MAZ, CTCF, RBM22
- Target gene symbol (double-evidenced CRMs): AP000311.1,ITSN1,CRYZL1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 24
- Number of somatic mutations (non-coding): 4
- Related genes and loops