- Basic information
- CohesinDB ID: CDBP00417518
- Locus: chr21-33862522-33862776
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Data sourse: GSE206145, GSE86191
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Cell type: RPE, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 71%,
"14_ReprPCWk": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, TRP47, SMC1A, KLF13, MYCN, POU5F1, ZFX, POU4F2, XBP1, ZBTB17, ZBTB48, WT1, FOXA1, ZNF662, ZBTB33, ERG3, CBX8, PRDM10, HNRNPK, KDM1A, YY1, CREBBP, ZNF384, RARA, OGG1, NEUROD1, ATF3, MYC, RELA, SMARCA4, ZNF362, RUNX2, SP140, GRHL3, HIF1A, SOX11, CBFB, DPF1, TAL1, MAX, MAF1, STAT3, ZNF143, IKZF1, MITF, CBX2, PLAG1, ZNF506, RBM39, NEUROG2, TFAP2C, KDM5B, EZH2, ESR1, C11orf30, ZNF334, SETDB1, EGR2, CTCF, USF1, SPI1, AR, ZNF157, E2F6, FLI1, HSF1, RNF2, MAZ, AATF, ZNF528, ZNF316
- Target gene symbol (double-evidenced CRMs): CRYZL1,AP000311.1,ITSN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 0
- Related genes and loops