- Basic information
- CohesinDB ID: CDBP00417521
- Locus: chr21-33867479-33868948
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Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE67783, GSE86191, GSE206145, GSE206145-NatGen2015, ENCSR153HNT
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Cell type: MCF-7, H1-hESC, RPE, Fibroblast, HCT-116, K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.922
- Subunit: Mau2,SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 65%,
"14_ReprPCWk": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, GLIS1, POU2F2, CHD8, ZSCAN5D, ZNF263, MYCN, BRF2, ZFX, ZBTB48, WT1, ZSCAN5A, TET2, ERG3, ZNF770, ERG2, ZFHX2, PRDM10, TBP, YY1, RELA, ATF3, ZFP64, SP140, GRHL3, ZIC2, GATA3, HMBOX1, APC, SMARCE1, MAX, PBX3, CHD1, FOS, RCOR1, CEBPB, ZNF506, NCOA3, SRSF3, KMT2A, NEUROG2, ESR1, OCA2, HDAC8, MYOD1, EGR2, CTCF, T, TCF12, BHLHE40, AR, ZBTB20, ZBTB42, SIX2, BRD4, MAZ, HCFC1R1, SMC3, STAG1, FOSL2
- Target gene symbol (double-evidenced CRMs): ITSN1,AP000311.1,CRYZL1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 28
- Number of somatic mutations (non-coding): 0
- Related genes and loops