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Basic information

CohesinDB ID: CDBP00417532

Locus: chr21-33890890-33891210

Data sourse: ENCSR153HNT, GSE86191

Cell type: K-562, HCT-116

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 90% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 63%, "5_TxWk": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: PGR, CHD8, FOXA2, MYCN, ZSCAN5D, RUNX1T1, SIN3A, ZFX, XBP1, ZBTB48, WT1, ZSCAN5A, FOXA1, ZNF770, TET2, ERG3, CBX8, HOXB13, YY1, RELA, ZNF384, JUNB, ZC3H8, SMARCA4, GATA4, SP140, NKX2-1, STAT3, MAX, NKX3-1, PRDM14, FOS, MED1, CBX2, NR3C1, CEBPB, ZNF93, ZNF26, SNAI2, STAG1, ZBTB6, EBF3, JUN, BAF155, AR, PAX8, RNF2, BRD4, MAZ, NCOA2, EHMT2

Target gene symbol (double-evidenced CRMs): DONSON,AP000311.1,IFNGR2,ITSN1,IFNAR2,CRYZL1,AP000295.1,SON

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000249624, ENSG00000159110, ENSG00000159128, ENSG00000159140, ENSG00000159147, ENSG00000249209, ENSG00000205758, ENSG00000205726,

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Deatailed information for cohesin site CDBP00417532