- Basic information
- CohesinDB ID: CDBP00417539
- Locus: chr21-33917462-33917726
-
Data sourse: ENCSR230ZWH, ENCSR917QNE
-
Cell type: Liver
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 73%,
"14_ReprPCWk": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: THAP11, NANOG, CEBPA, FOXA2, HMG20A, SOX13, ZFX, FOXA1, HLF, RXRB, HOXB13, ERG, YY1, RARA, THRB, RAD21, PBX4, RXRA, NKX3-1, TLE3, KLF6, PIAS1, RCOR2, ZNF652, SP1, BAF155, HNF4A, AR, SOX5, GATA2, ZBTB26, FOXP1, NFIL3, FOXA3, GATAD2A
- Target gene symbol (double-evidenced CRMs): SMIM11A,IFNAR2,MRPS6,AP000311.1,SLC5A3,RUNX1,SON,RCAN1,ITSN1,ATP5PO,DONSON,CRYZL1,AP000295.1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 1
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000249624,
ENSG00000159110,
ENSG00000159140,
ENSG00000159147,
ENSG00000249209,
ENSG00000205758,
ENSG00000205726,
ENSG00000241837,
ENSG00000243927,
ENSG00000198743,
ENSG00000205670,
ENSG00000159200,
ENSG00000159216,
- Related loop:
chr21:33200000-33225000~~chr21:33900000-33925000,
chr21:33550000-33575000~~chr21:33900000-33925000,
chr21:33575000-33600000~~chr21:33900000-33925000,
chr21:33600000-33625000~~chr21:33900000-33925000,
chr21:33650000-33675000~~chr21:33900000-33925000,
chr21:33675000-33700000~~chr21:33900000-33925000,
chr21:33700000-33725000~~chr21:33900000-33925000,
chr21:33750000-33775000~~chr21:33900000-33925000,
chr21:33900000-33925000~~chr21:34050000-34075000,
chr21:33900000-33925000~~chr21:34075000-34100000,
chr21:33900000-33925000~~chr21:34100000-34125000,
chr21:33900000-33925000~~chr21:34175000-34200000,
chr21:33900000-33925000~~chr21:34200000-34225000,
chr21:33900000-33925000~~chr21:34225000-34250000,
chr21:33900000-33925000~~chr21:34250000-34275000,
chr21:33900000-33925000~~chr21:34325000-34350000,
chr21:33900000-33925000~~chr21:34350000-34375000,
chr21:33900000-33925000~~chr21:34500000-34525000,
chr21:33900000-33925000~~chr21:34525000-34550000,
chr21:33900000-33925000~~chr21:34600000-34625000,
chr21:33900000-33925000~~chr21:34625000-34650000,
chr21:33900000-33925000~~chr21:34875000-34900000,
chr21:33900000-33925000~~chr21:36025000-36050000,
chr21:33914721-33916686~~chr21:34347220-34348816,
chr21:33914796-33916595~~chr21:34351238-34352674,
chr21:33914900-33916542~~chr21:34347151-34348865,
chr21:33915150-33916451~~chr21:34347188-34348864,
chr21:33922474-33925874~~chr21:34242616-34244890,
chr21:33922474-33925874~~chr21:34334528-34336154,
chr21:33922474-33925874~~chr21:34347201-34348842,
chr21:33922474-33925874~~chr21:34350903-34352912,
chr21:33922474-33925874~~chr21:34361152-34363316,
chr21:33922478-33925703~~chr21:34242552-34244759,
chr21:33922478-33925703~~chr21:34347178-34348870,
chr21:33922478-33925703~~chr21:34350953-34352703,
chr21:33922482-33925641~~chr21:34242769-34244742,
chr21:33922482-33925641~~chr21:34347190-34348909,
chr21:33922482-33925641~~chr21:34351260-34352734,
chr21:33922485-33925689~~chr21:34242598-34244771,
chr21:33922485-33925689~~chr21:34347190-34348835,
chr21:33922485-33925689~~chr21:34350945-34352862,
chr21:33922491-33925917~~chr21:34200938-34203575,
chr21:33922491-33925917~~chr21:34242559-34244950,
chr21:33922491-33925917~~chr21:34347170-34348852,
chr21:33922491-33925917~~chr21:34350938-34352700,
chr21:33922497-33925632~~chr21:34200972-34203070,
chr21:33922497-33925632~~chr21:34242565-34244736,
chr21:33922497-33925632~~chr21:34347223-34348899,
chr21:33922497-33925632~~chr21:34350970-34352701,
chr21:33922506-33925702~~chr21:34231067-34232322,
chr21:33922506-33925702~~chr21:34243018-34244439,
chr21:33922506-33925702~~chr21:34347170-34348764,
chr21:33922506-33925702~~chr21:34351099-34352751,
chr21:33922506-33925702~~chr21:34361196-34363023,
chr21:33922548-33925984~~chr21:34347119-34348821,
chr21:33922548-33925984~~chr21:34351060-34352696,
chr21:33922677-33925654~~chr21:34108278-34109481,
chr21:33922677-33925654~~chr21:34242517-34244715,
chr21:33922677-33925654~~chr21:34347167-34348827,
chr21:33922677-33925654~~chr21:34351004-34352678,
chr21:33922678-33925692~~chr21:34230884-34232496,
chr21:33922678-33925692~~chr21:34242813-34244834,
chr21:33922678-33925692~~chr21:34347169-34348885,
chr21:33922678-33925692~~chr21:34350968-34352861,
chr21:33922678-33925692~~chr21:34360488-34363116,
chr21:33922723-33925649~~chr21:34201110-34202883,
chr21:33922723-33925649~~chr21:34242578-34244694,
chr21:33922723-33925649~~chr21:34347391-34348852,
chr21:33922723-33925649~~chr21:34351297-34352672,
chr21:33922723-33925649~~chr21:34361210-34363114,
chr21:7750000-7775000~~chr21:33900000-33925000,
chr21:7800000-7825000~~chr21:33900000-33925000,