- Basic information
- CohesinDB ID: CDBP00417558
- Locus: chr21-33966349-33970266
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Data sourse: ENCSR230ZWH, GSE72082, ENCSR000BLY, ENCSR404BPV, GSE105028, ENCSR000EDW, GSE165895, ENCSR000EFJ, GSE93080, ENCSR917QNE, ENCSR000DZP, GSE67783, GSE115250, GSE101921, GSE206145-NatGen2015, ENCSR198ZYJ, GSE94872, GSE98367, ENCSR879KXD, ENCSR000BLS, GSE206145, ENCSR054FKH, ENCSR537EFT, ENCSR153HNT, GSE50893
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Cell type: GM10847, GM2610, Liver, TC-32, H9-hESC, RPE, Fibroblast, IMR-90, K-562, HFFc6, GM12878, SK-N-SH, Macrophage, GM12892, HEK293T, Hep-G2, Neurons-H1, A-549, HUVEC, HCAEC, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 16% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.767
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"7_Enh": 34%,
"15_Quies": 26%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, FOSL1, PGR, SMARCA2, HMG20A, MEIS2, XBP1, HNF1A, PATZ1, FOXA1, SUZ12, RBFOX2, PBX2, RXRB, MLL4, KDM3A, HDGF, ATF3, NFIC, ZNF362, ZBTB44, PRDM1, CHD7, ATF4, ZNF273, MXD4, ZNF189, SMARCE1, DPF1, MITF, ZNF736, CDX2, ZNF629, JMJD1C, TEAD1, TRIM28, ELF1, KLF6, SNAI2, NFE2L2, KLF10, ZNF217, ESR1, HNF1B, MED26, RCOR2, MLL, USF2, ZNF561, CTCF, TCF12, ZNF507, EP300, E4F1, BAF155, KLF1, JUN, GATA6, SOX5, DPF2, PAX8, SOX4, SIX5, IRF4, RAD51, ZNF410, E2F1, ZNF528, SMC1, ZBTB24, TEAD4, FOXA3, KMT2B, GATAD2A, PDX1, TFAP2C, GTF2F1, RBPJ, EHMT2, ZNF573, NANOG, CHD8, BRD3, POU5F1, ID3, CTBP1, ZSCAN21, ZBTB17, ZBTB48, ZMYND11, STAT1, ERF, ZNF317, MLLT3, GATAD1, DDX5, SAP130, ARID3A, SP4, SRF, TBP, NBN, ERG, ZBTB21, HOXC5, HNF4G, USP7, ETS1, MYC, ONECUT1, SMARCA4, EOMES, ARID1B, HOMEZ, RAD21, EZH1, LHX2, GRHL3, PROX1, NKX2-1, FOXK2, RXRA, GABPA, STAT3, XRCC5, ZNF614, UBN1, NKX3-1, IKZF1, NFE2, RCOR1, NR2F6, MIER3, VDR, ZNF639, NR3C1, CEBPB, ARNTL, CREB1, CCAR2, EZH2, DDX21, KLF8, GABPB1, ELF4, ZHX2, SPI1, TFE3, EHF, IRF1, HDAC2, GATA2, INTS13, ZNF644, ETV1, MXD3, FLI1, HCFC1, NR2C2, ZGPAT, DRAP1, RELB, MRTFB, ZNF76, ZC3H11A, NFIL3, ATF1, ETV5, RUNX1, THAP11, SMC1A, BCL6, CEBPA, EZH2phosphoT487, HDAC1, CRY1, ZNF335, ZFX, SOX13, ZNF534, SIN3A, SMAD3, NKX2-2, ZNF770, TRIM22, TWIST1, SMARCC1, PRDM10, RARA, ZNF384, NFYC, NOTCH1, HMBOX1, PRPF4, RUNX2, GATA4, OSR2, ZNF184, DAXX, ARNT, PBX4, ZNF48, HMGB2, ZNF518A, SMAD4, ZEB2, PBX3, NFYA, NR2C1, FOS, HMGXB4, CDK8, FOXM1, MED1, TEAD3, DIDO1, ZXDB, CEBPD, MYB, ZEB1, NR1H2, KLF9, L3MBTL2, TBX5, ZNF22, USF1, NIPBL, MAFK, SP1, HNF4A, BCL11A, IKZF5, REST, ARID1A, ATF7, ASH2L, PHIP, AFF1, MBD2, FOXP1, PRDM6, SMC3, MLLT1, STAG1, STAG2, ZNF394, ZNF283, CBFA2T2, FOXA2, MTA3, CREM, MEIS1, CBX3, EBF1, MIER2, ZNF692, GTF2B, WT1, ZSCAN16, ZNF574, DUX4, ZBTB33, CDK9, YY2, ZNF580, BCL3, HOXB13, KDM1A, YY1, RELA, CREB3L1, TARDBP, NEUROD1, JUNB, BRCA1, TCF4, HIF1A, OTX2, GATA3, TAL1, MAX, GATA1, ZNF143, MTA1, PLAG1, KLF4, ZNF592, SP7, NCOA3, GFI1B, NR2F2, ZFP69B, NR2F1, NEUROG2, TP53, PKNOX1, ZNF687, ZNF334, MYOD1, T, BRD2, ELF3, KAT8, ARID4B, AR, NFKBIZ, BHLHE40, TAF1, ZBTB40, RXR, ZNF324, RB1, ZBTB26, RNF2, NCOR1, BRD4, JUND, ILF3, CUX1, MAZ, ZSCAN23, IRF9, ZNF24, DMAP1, FOSL2
- Target gene symbol (double-evidenced CRMs): SLC5A3,RCAN1,MRPS6,SMIM11A,RUNX1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 23
- Related genes and loops
- Related gene:
ENSG00000243927,
ENSG00000198743,
ENSG00000205670,
ENSG00000159200,
ENSG00000159216,
- Related loop:
chr21:33850000-33875000~~chr21:33975000-34000000,
chr21:33947080-33950802~~chr21:33974662-33978199,
chr21:33950000-33975000~~chr21:34050000-34075000,
chr21:33950000-33975000~~chr21:34200000-34225000,
chr21:33950000-33975000~~chr21:34325000-34350000,
chr21:33950000-33975000~~chr21:34350000-34375000,
chr21:33950000-33975000~~chr21:34500000-34525000,
chr21:33950000-33975000~~chr21:34525000-34550000,
chr21:33950000-33975000~~chr21:34600000-34625000,
chr21:33950000-33975000~~chr21:34625000-34650000,
chr21:33950000-33975000~~chr21:34800000-34825000,
chr21:33967731-33970173~~chr21:34092084-34093399,
chr21:33974662-33978199~~chr21:34019317-34021802,
chr21:33974892-33977435~~chr21:34017276-34018537,
chr21:33974960-33977785~~chr21:34201385-34202931,
chr21:33975000-34000000~~chr21:34125000-34150000,
chr21:33975000-34000000~~chr21:34200000-34225000,
chr21:33975000-34000000~~chr21:34325000-34350000,
chr21:33975000-34000000~~chr21:34550000-34575000,