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Basic information

CohesinDB ID: CDBP00417562

Locus: chr21-33979561-33981762

Data sourse: ENCSR167MTG, ENCSR230ZWH, GSE67783, GSE72082, GSE86191, GSE98367, ENCSR879KXD, GSE206145, GSE206145-NatGen2015, ENCSR054FKH, GSE120943, ENCSR153HNT, GSE68388, GSE103477, ENCSR000EDW, ENCSR917QNE

Cell type: MDM, Macrophage, RPE, Fibroblast, HCT-116, Monocytes, Hep-G2, K-562, Liver, HSPC, HuCC-T1

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 4% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.878

Subunit: SA1,Rad21,SMC1,SA2,SMC3

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: non-Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 90% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 57%, "5_TxWk": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: PAX8, TRIM28, ZFX, WT1, PRDM10

Target gene symbol (double-evidenced CRMs): AP000311.1,RCAN1,ITSN1,MRPS6

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 13

Related genes and loops

Related gene: ENSG00000249209, ENSG00000205726, ENSG00000243927, ENSG00000159200,

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Deatailed information for cohesin site CDBP00417562