- Basic information
- CohesinDB ID: CDBP00417570
- Locus: chr21-33996870-33997828
-
Data sourse: ENCSR000BTQ, ENCSR167MTG, GSE206145-GSE177045, ENCSR230ZWH, ENCSR000BKV, GSE72082, ENCSR000BSB, GSE98367, GSE76893, ENCSR000BLS, ENCSR054FKH, GSE68388, ENCSR703TNG, GSE25021, GSE50893, ENCSR000EDW, ENCSR000ECS
-
Cell type: MCF-7, Macrophage, HCT-116, Hep-G2, GM12878, GM2588, GM12890, HeLa-S3, HuCC-T1, K-562, Liver, GM18486
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 6% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.867
- Subunit: SMC3,Rad21,SA1,SMC1
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 63%,
"9_Het": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: SMC1A, POU5F1, ZNF534, XBP1, RELA, MYC, RAD21, TCF4, GRHL3, BHLHE22, SMAD4, APC, NR3C1, TRIM28, SETDB1, CTCF, ELF3, MAFK, SPI1, HNF4A, ZFP82
- Target gene symbol (double-evidenced CRMs): AP000311.1,ITSN1,MRPS6,RCAN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops