- Basic information
- CohesinDB ID: CDBP00417572
- Locus: chr21-34000214-34000758
-
Data sourse: GSE206145, GSE67783, ENCSR153HNT, GSE86191
-
Cell type: K-562, HCT-116, HSPC, RPE
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 89%,
"14_ReprPCWk": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: POU2F2, ZNF316, ZSCAN5D, MYCN, EBF1, CRY1, TBL1X, ZFX, WT1, ZBTB48, MAFF, TET2, DDX5, YY1, RELA, MYC, THAP1, SP140, TCF4, NR2F1, ESR1, OCA2, MYOD1, CTCF, MAFK, SPI1, AR, REST, ZBTB42, HSF1, BRD4, MAZ, SMC3, STAG1, RBPJ
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops