- Basic information
- CohesinDB ID: CDBP00417575
- Locus: chr21-34004611-34005989
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Data sourse: GSE206145-NatGen2015, ENCSR153HNT, ENCSR879KXD
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Cell type: K-562, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 70%,
"7_Enh": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, FOSL1, PPARG, FOXA2, HDAC1, POU5F1, TOP2A, SIN3A, ZFX, EBF1, MTA2, XBP1, ZBTB48, ZSCAN5A, FOXA1, ZNF205, TWIST1, ERG, RELA, CREBBP, ZBTB2, RUNX2, EZH1, GATA4, SMARCA4, CDK6, NFIC, ARNT, GRHL3, HIF1A, GATA3, PAX5, FOXM1, NRIP1, ZNF143, MTA1, GATA1, MITF, DACH1, MED1, PBX3, GMEB1, NR3C1, ESRRA, TERF1, TRIM28, CEBPD, MCM7, ZNF416, TEAD1, TFAP2C, NR2F2, ESR1, PKNOX1, NEUROG2, ZNF334, TRPS1, JUN, CTCF, USF1, BCL11A, AR, GATA6, PAX3-FOXO1, PAX8, HDAC2, GATA2, GATAD2B, ZNF366, BRD4, BCOR, ZNF528, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 7
- Related genes and loops