- Basic information
- CohesinDB ID: CDBP00417586
- Locus: chr21-34031034-34031301
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Data sourse: ENCSR153HNT
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Cell type: K-562
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 64%,
"5_TxWk": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, ZNF480, SOX2, NME2, XBP1, PATZ1, FOXA1, KDM4B, SUZ12, PBX2, MLL4, HDGF, ATF3, ZFP64, ZNF362, RUNX3, ATF4, DPF1, ZSCAN4, TP63, MITF, ZNF736, BACH2, CDX2, ZNF629, MAF, ELF1, TRIM28, TEAD1, NFE2L2, KLF10, ZNF217, ESR1, OCA2, MED26, PITX3, HDAC8, USF2, CTCF, ZNF507, JUN, BAF155, E4F1, KLF1, ZBTB20, MNT, DPF2, RYBP, E2F6, SIX5, IRF4, TRIM24, CREB3, RAD51, E2F1, ZNF528, TEAD4, FOXA3, GTF2F1, PDX1, TFAP2C, RBPJ, EHMT2, EED, GATAD2A, POU2F2, CHD8, ZSCAN5D, BRD3, ZNF263, POU5F1, ID3, MYCN, CTBP1, ZBTB17, ZSCAN5A, STAT1, SRF, SAP130, NBN, ARID3A, SP4, ZNF485, TBP, ERG, ZBTB21, ETS1, MYC, SMARCA4, KDM4A, RAD21, RXRA, NKX2-1, GABPA, STAT3, XRCC5, IKZF1, RCOR1, NFE2, NR3C1, CEBPB, KMT2A, CREB1, EZH2, DDX21, KLF8, GABPB1, ELF4, ZHX2, SPI1, IRF1, HDAC2, INTS13, GATA2, MXD3, SREBF1, FLI1, HCFC1, NR2C2, RELB, EP400, NFYB, ZNF76, ZNF554, ATF1, RUNX1, THAP11, BCL6, SMC1A, MAFG, HDAC1, CEBPA, ZNF335, ZFX, AFF4, POU4F2, SMAD3, ERG3, TRIM22, ZNF549, PRDM10, TWIST1, IRF2, CBX4, NFYC, NOTCH1, ZNF35, CREBBP, RUNX2, ZNF384, RARA, ZNF184, SP3, ARNT, BACH1, NRF1, HMGB2, ATF2, ZNF518A, NFYA, ZEB2, MAFB, SP2, FOS, NR2C1, CDK8, MED1, TEAD3, DIDO1, ZXDB, ZNF558, ZEB1, PIAS1, ZNF3, C11orf30, L3MBTL2, KLF16, USF1, SP1, MAFK, BCL11A, REST, RBM25, ATF7, AFF1, BCOR, MBD2, FOXP1, SMC3, STAG1, MLLT1, CBFA2T2, PPARG, TBL1X, CBX3, CREM, CHD2, MTA3, FOXA2, EBF1, ZNF692, GTF2B, WT1, MAFF, E2F8, ZNF574, CDK9, ZKSCAN1, CREB3L1, KDM1A, RELA, YY1, TARDBP, NEUROD1, AHR, JUNB, ZIC2, HIF1A, PCGF1, OTX2, GATA3, BATF, MGA, MAX, ZNF143, GATA1, PLAG1, KLF4, ZFP69B, SP7, NCOA3, GFI1B, ZNF592, CEBPG, ZNF512, TP53, PKNOX1, ZNF687, ZNF334, ZSCAN22, MYOD1, PHOX2B, BRD2, ELF3, ARRB1, TBX21, BHLHE40, AR, ZBTB40, ZNF324, EGLN2, ZBTB42, HSF1, NOTCH3, JUND, ILF3, BRD4, MAZ, BRCA1, ZNF316, FOSL2
- Target gene symbol (double-evidenced CRMs): RCAN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops