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Basic information

CohesinDB ID: CDBP00417600

Locus: chr21-34055195-34056225

Data sourse: GSE67783, GSE86191, GSE206145, ENCSR153HNT, GSE50893

Cell type: RPE, HCT-116, GM12891, K-562, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.944

Subunit: SA1,Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 91% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 80%, "7_Enh": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: PGR, XBP1, FOXA1, ZFHX2, TFAP4, HDGF, ZSCAN4, HDAC3, CDX2, ZNF467, JMJD1C, KLF5, TRIM28, ETV1, ESR1, OCA2, CTCF, BAF155, IRF4, FOXA3, RBPJ, EED, NANOG, POU2F2, KDM4C, ERF, ZBTB48, ERG2, ERG, ASCL1, MYC, RAD21, NKX2-1, GABPA, XRCC5, NKX3-1, IKZF1, VDR, NR3C1, ESRRA, CEBPB, CREB1, EZH2, GRHL2, SPI1, GATA2, RUNX1, BCL6, SOX13, ZFX, ERG3, SP5, CREBBP, ZNF384, RUNX2, GATA4, ARNT, PIAS1, NIPBL, HNF4A, ARID1A, ZNF479, ASH2L, FOXP1, SMC3, STAG1, FOXA2, WT1, ZNF662, HOXB13, RELA, SP140, HIF1A, GATA3, BATF, MAX, NRIP1, GATA1, TLE3, NCOA3, NR2F1, EGR2, BRD2, AR, EGLN2, IKZF2, BRD4, ZNF24, AHR

Target gene symbol (double-evidenced CRMs): AP000311.1,SMIM11A,SON,ATP5PO,RCAN1,ITSN1,GART

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 2

Related genes and loops

Related gene: ENSG00000159131, ENSG00000159140, ENSG00000249209, ENSG00000205726, ENSG00000241837, ENSG00000205670, ENSG00000159200,

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Deatailed information for cohesin site CDBP00417600