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Basic information

CohesinDB ID: CDBP00417603

Locus: chr21-34058985-34059676

Data sourse: GSE67783, ENCSR153HNT

Cell type: K-562, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 91% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 88%, "14_ReprPCWk": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, CDK9-HEXIM1, SMC1A, CHD8, CEBPA, MYCN, TOP2A, ZFX, XBP1, WT1, ZSCAN5A, DUX4, ERG, YY1, RELA, ATF3, RUNX2, MCM3, GRHL3, HIF1A, TAL1, CEBPG, CEBPB, NR3C1, TEAD3, TRIM28, ZBTB6, ZNF334, ZNF652, CTCF, SPI1, AR, BRD4, MAZ, STAG1

Target gene symbol (double-evidenced CRMs): GART,AP000311.1,ITSN1,ATP5PO,RCAN1,SMIM11A,SON

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 6

Related genes and loops

Related gene: ENSG00000159131, ENSG00000159140, ENSG00000249209, ENSG00000205726, ENSG00000241837, ENSG00000205670, ENSG00000159200,

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Deatailed information for cohesin site CDBP00417603