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Basic information

CohesinDB ID: CDBP00417604

Locus: chr21-34061874-34062292

Data sourse: GSE101921, ENCSR879KXD

Cell type: K-562, HCAEC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: Rad21,SA2

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 91% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 83%, "14_ReprPCWk": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: SOX2, SUZ12, PBX2, ATF3, RUNX3, ATF4, DPF1, MITF, ELF1, TRIM28, KLF10, ESR1, USF2, ZFP91, JUN, TAF3, E4F1, LMO1, SIX5, IRF4, RAD51, E2F1, EHMT2, NANOG, CDK7, CTBP1, ZBTB48, STAT1, ERG, ETS1, MYC, GABPA, RCOR1, NFE2, CREB1, DDX21, GABPB1, ELF4, SPI1, INTS13, HCFC1, NFYB, ATF1, RUNX1, THAP11, ZNF534, IRF2, NFYC, RUNX2, ARNT, NRF1, HMBOX1, ZEB2, NFYA, FOS, CDK8, MED1, MYB, SCRT2, USF1, SP1, BCL11A, REST, ATF7, MBD2, STAG2, CBFA2T2, CREM, CDK9, CREB3L1, YY1, RELA, HIF1A, OTX2, GATA3, TAL1, MAX, SPIB, ZNF143, GATA1, PLAG1, TP53, BRD2, AR, ZBTB40, BRD4, ILF3, JUND

Target gene symbol (double-evidenced CRMs): SON,SMIM11A,AP000311.1,ITSN1,GART,RCAN1,ATP5PO

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 1

Related genes and loops

Related gene: ENSG00000159131, ENSG00000159140, ENSG00000249209, ENSG00000205726, ENSG00000241837, ENSG00000205670, ENSG00000159200,

eachgene

Deatailed information for cohesin site CDBP00417604