Browse_each

Basic information

CohesinDB ID: CDBP00417606

Locus: chr21-34066661-34066866

Data sourse: ENCSR054FKH, GSE72082

Cell type: Hep-G2

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 91% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 71%, "14_ReprPCWk": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, THAP11, TRP47, BCL6, SMC1A, FOXA2, HMG20A, CEBPA, MYCN, TBL1X, NME2, ZFX, XBP1, TEAD4, ZBTB48, WT1, FOXA1, TET2, GATAD1, SAP130, MLL4, TBP, ZNF300, TFAP4, ERG, RELA, RARA, AHR, MYC, ATF3, SMARCA4, ZNF184, SP140, PROX1, ZNF48, PRDM9, SMAD4, STAT3, MAX, XRCC5, CHD1, MED1, TEAD3, TEAD1, KDM6B, SCRT2, LMO2, TP53, ESR1, CHD8, ZNF334, ELF3, CTCF, EP300, TFE3, HNF4A, AR, BHLHE40, IKZF5, GATA2, ZNF644, PTBP1, SOX6, ASH2L, ZBTB26, HSF1, SCRT1, JUND, BRD4, FOXP1, NCOR1, MAZ, NOTCH3, SMC3, FOXA3, GATAD2A, STAG1, MLX

Target gene symbol (double-evidenced CRMs): GART,SMIM11A,AP000311.1,SON,ATP5PO,ITSN1,RCAN1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000159131, ENSG00000159140, ENSG00000249209, ENSG00000205726, ENSG00000241837, ENSG00000205670, ENSG00000159200,

eachgene

Deatailed information for cohesin site CDBP00417606