Deatailed information for cohesin site CDBP00417607
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBP00417607
- Locus: chr21-34067086-34067512
- Data sourse: ENCSR000BLD, GSE67783, GSE86191, GSE206145-NatGen2015, ENCSR153HNT
- Cell type: H1-hESC, Fibroblast, HCT-116, K-562, HSPC
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21
- CTCF binding site: non-CTCF CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True
- Compartment: 91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 68%,
"14_ReprPCWk": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: RUNX1, THAP11, TRP47, BCL6, SMC1A, FOXA2, HMG20A, CEBPA, MYCN, TBL1X, NME2, ZFX, XBP1, TEAD4, ZBTB48, WT1, FOXA1, TET2, GATAD1, SAP130, MLL4, TBP, ZNF300, TFAP4, ERG, RELA, RARA, AHR, MYC, ATF3, SMARCA4, ZNF184, SP140, PROX1, ZNF48, PRDM9, SMAD4, STAT3, MAX, XRCC5, CHD1, MED1, TEAD3, TEAD1, KDM6B, SCRT2, LMO2, TP53, ESR1, CHD8, ZNF334, ELF3, CTCF, EP300, TFE3, HNF4A, AR, BHLHE40, IKZF5, GATA2, ZNF644, PTBP1, SOX6, ASH2L, ZBTB26, HSF1, SCRT1, JUND, BRD4, FOXP1, NCOR1, MAZ, NOTCH3, SMC3, FOXA3, GATAD2A, STAG1, MLX
- Target gene symbol (double-evidenced CRMs): AP000311.1,SON,ITSN1,ATP5PO,GART,RCAN1,SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene: ENSG00000159131, ENSG00000159140, ENSG00000249209, ENSG00000205726, ENSG00000241837, ENSG00000205670, ENSG00000159200,
- Related loop: chr21:33525000-33550000~~chr21:34050000-34075000, chr21:33675000-33700000~~chr21:34050000-34075000, chr21:33900000-33925000~~chr21:34050000-34075000, chr21:33922794-33925655~~chr21:34072307-34075130, chr21:33922799-33925652~~chr21:34072055-34075610, chr21:33923120-33925433~~chr21:34072467-34075245, chr21:33923144-33925455~~chr21:34072248-34074599, chr21:33923188-33925377~~chr21:34072259-34075558, chr21:33925000-33950000~~chr21:34050000-34075000, chr21:33946866-33949184~~chr21:34072307-34075130, chr21:33950000-33975000~~chr21:34050000-34075000, chr21:34050000-34075000~~chr21:34200000-34225000, chr21:34050000-34075000~~chr21:34250000-34275000, chr21:34050000-34075000~~chr21:34325000-34350000, chr21:34050000-34075000~~chr21:34350000-34375000, chr21:34050000-34075000~~chr21:34500000-34525000, chr21:34050000-34075000~~chr21:34600000-34625000, chr21:34072033-34075564~~chr21:34347215-34348903, chr21:34072055-34075610~~chr21:34350835-34352930, chr21:34072078-34075520~~chr21:34201046-34202955, chr21:34072203-34075604~~chr21:34347152-34348883, chr21:34072203-34075604~~chr21:34350950-34352712, chr21:34072301-34075531~~chr21:34347428-34348867, chr21:34072301-34075531~~chr21:34350864-34352907, chr21:34072459-34075273~~chr21:34347146-34348894,
Tools:
- Assay
