- Basic information
- CohesinDB ID: CDBP00417608
- Locus: chr21-34070416-34071494
-
Data sourse: GSE67783, GSE86191, GSE206145, GSE206145-NatGen2015, ENCSR153HNT
-
Cell type: RPE, Fibroblast, HCT-116, K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SA2
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 64%,
"14_ReprPCWk": 27%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: C11orf30, ZNF384, ZNF316
- Target gene symbol (double-evidenced CRMs): AP000311.1,SMIM11A,ITSN1,SLC5A3,SON,GART,RCAN1,MRPS6,ATP5PO
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 9
- Related genes and loops
- Related gene:
ENSG00000159131,
ENSG00000159140,
ENSG00000249209,
ENSG00000205726,
ENSG00000241837,
ENSG00000243927,
ENSG00000198743,
ENSG00000205670,
ENSG00000159200,
- Related loop:
chr21:33525000-33550000~~chr21:34050000-34075000,
chr21:33675000-33700000~~chr21:34050000-34075000,
chr21:33900000-33925000~~chr21:34050000-34075000,
chr21:33900000-33925000~~chr21:34075000-34100000,
chr21:33922794-33925655~~chr21:34072307-34075130,
chr21:33922799-33925652~~chr21:34072055-34075610,
chr21:33923120-33925433~~chr21:34072467-34075245,
chr21:33923144-33925455~~chr21:34072248-34074599,
chr21:33923188-33925377~~chr21:34072259-34075558,
chr21:33925000-33950000~~chr21:34050000-34075000,
chr21:33925000-33950000~~chr21:34075000-34100000,
chr21:33931110-33932979~~chr21:34072676-34074842,
chr21:33946866-33949184~~chr21:34072307-34075130,
chr21:33950000-33975000~~chr21:34050000-34075000,
chr21:34050000-34075000~~chr21:34200000-34225000,
chr21:34050000-34075000~~chr21:34250000-34275000,
chr21:34050000-34075000~~chr21:34325000-34350000,
chr21:34050000-34075000~~chr21:34350000-34375000,
chr21:34050000-34075000~~chr21:34500000-34525000,
chr21:34050000-34075000~~chr21:34600000-34625000,
chr21:34072033-34075564~~chr21:34347215-34348903,
chr21:34072055-34075610~~chr21:34350835-34352930,
chr21:34072078-34075520~~chr21:34201046-34202955,
chr21:34072203-34075604~~chr21:34347152-34348883,
chr21:34072203-34075604~~chr21:34350950-34352712,
chr21:34072301-34075531~~chr21:34347428-34348867,
chr21:34072301-34075531~~chr21:34350864-34352907,
chr21:34072459-34075273~~chr21:34347146-34348894,
chr21:34073796-34075161~~chr21:34347195-34348845,
chr21:34075000-34100000~~chr21:34175000-34200000,
chr21:34075000-34100000~~chr21:34325000-34350000,