- Basic information
- CohesinDB ID: CDBP00417612
- Locus: chr21-34078920-34079706
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Data sourse: GSE138105, GSE206145-NatGen2015, ENCSR230ZWH, ENCSR917QNE
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Cell type: Liver, SLK, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"5_TxWk": 52%,
"7_Enh": 31%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PGR, ZNF496, SOX2, XBP1, FOXA1, RBFOX2, NFIC, ZNF362, RUNX3, PRDM1, WDHD1, CHD7, CDX2, TEAD1, TRIM28, ESR1, JUN, CTCF, BAF155, DPF2, IRF4, SOX6, TEAD4, TFAP2C, NANOG, POU5F1, ZNF778, DUX4, ZBTB48, ERG, NFKB2, MYC, SMARCA4, EOMES, RAD21, LHX2, GRHL3, RXRA, STAT3, NKX3-1, ESRRA, KMT2A, CREB1, SPI1, GATA2, SSRP1, ZNF766, RELB, ZIM3, NKX2-2, SIN3A, ZNF384, ZNF35, GATA4, PBX4, DAXX, ARNT, SOX11, ATF2, PRDM9, ZEB2, SUPT5H, FOS, MED1, MYB, PIAS1, SUPT16H, C11orf30, RBM22, SP1, PHIP, FOXP1, PRDM6, MLLT1, MEF2B, FOXA2, EBF1, NFATC1, PAF1, CDK9, HOXB13, RELA, NEUROD1, OTX2, GATA3, BATF, TAL1, GATA1, AGO2, ZNF143, TLE3, KLF4, TP53, ELF3, AR, BRD4, JUND, ZNF316
- Target gene symbol (double-evidenced CRMs): ITSN1,MRPS6,SLC5A3,AP000311.1,ATP5PO
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 10
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000249209,
ENSG00000205726,
ENSG00000241837,
ENSG00000243927,
ENSG00000198743,
- Related loop:
chr21:33525000-33550000~~chr21:34050000-34075000,
chr21:33675000-33700000~~chr21:34050000-34075000,
chr21:33900000-33925000~~chr21:34050000-34075000,
chr21:33900000-33925000~~chr21:34075000-34100000,
chr21:33922794-33925655~~chr21:34072307-34075130,
chr21:33922799-33925652~~chr21:34072055-34075610,
chr21:33923120-33925433~~chr21:34072467-34075245,
chr21:33923144-33925455~~chr21:34072248-34074599,
chr21:33923188-33925377~~chr21:34072259-34075558,
chr21:33925000-33950000~~chr21:34050000-34075000,
chr21:33925000-33950000~~chr21:34075000-34100000,
chr21:33931110-33932979~~chr21:34072676-34074842,
chr21:33946866-33949184~~chr21:34072307-34075130,
chr21:33950000-33975000~~chr21:34050000-34075000,
chr21:34050000-34075000~~chr21:34200000-34225000,
chr21:34050000-34075000~~chr21:34250000-34275000,
chr21:34050000-34075000~~chr21:34325000-34350000,
chr21:34050000-34075000~~chr21:34350000-34375000,
chr21:34050000-34075000~~chr21:34500000-34525000,
chr21:34050000-34075000~~chr21:34600000-34625000,
chr21:34072033-34075564~~chr21:34347215-34348903,
chr21:34072055-34075610~~chr21:34350835-34352930,
chr21:34072078-34075520~~chr21:34201046-34202955,
chr21:34072203-34075604~~chr21:34347152-34348883,
chr21:34072203-34075604~~chr21:34350950-34352712,
chr21:34072301-34075531~~chr21:34347428-34348867,
chr21:34072301-34075531~~chr21:34350864-34352907,
chr21:34072459-34075273~~chr21:34347146-34348894,
chr21:34073796-34075161~~chr21:34347195-34348845,
chr21:34075000-34100000~~chr21:34175000-34200000,
chr21:34075000-34100000~~chr21:34325000-34350000,