- Basic information
- CohesinDB ID: CDBP00417617
- Locus: chr21-34088093-34088654
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Data sourse: GSE206145, GSE98367, ENCSR879KXD, GSE121355
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Cell type: K-562, RPE, HCT-116, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 75%,
"7_Enh": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, MEIS2, NME2, XBP1, FOXA1, RBFOX2, PBX2, HDGF, MEN1, ATF3, SMARCE1, PAX5, ZSCAN4, TEAD1, TRIM28, ZNF573, NFE2L2, LMO2, ESR1, ZNF217, CTCF, JUN, BAF155, EP300, DPF2, PAX8, SOX6, E2F1, TEAD4, ZNF175, TFAP2C, POU2F2, CHD8, BRD1, POU5F1, ZNF263, ID3, CTBP1, DUX4, NBN, TBP, ERG, MYC, SMARCA4, RFX1, ARID1B, RAD21, GRHL3, RCOR1, NFE2, ARNTL, NR3C1, CEBPB, STAT5B, KMT2A, CREB1, TBL1XR1, GRHL2, FEZF1, TRPS1, HES1, SPI1, HDAC2, GATA2, SSRP1, GATAD2B, SMARCA5, ZIM3, NCOA2, RUNX1, MAFG, CBX1, HDAC1, SIN3A, ZFX, POU4F2, ZNF534, CREBBP, ZXDC, RUNX2, ARNT, HMBOX1, ZEB2, CBFA2T3, SUPT5H, GMEB1, MYB, PIAS1, C11orf30, L3MBTL2, TBX5, RBM22, MAFK, NIPBL, BCL11A, ZBTB7A, ATF7, CTBP2, MBD2, FOXP1, ZNF337, MLLT1, STAG1, PPARG, ZNF316, MTA3, CREM, PAF1, NFATC1, ZNF600, MAFF, ZNF30, HOXB13, ZKSCAN1, ZNF318, KDM1A, RELA, TARDBP, HIF1A, GATA3, MGA, TAL1, MAX, NRIP1, GATA1, MTA1, ZNF143, AGO2, TLE3, NCOA3, NR2F2, GFI1B, TCF7L2, TP53, MYOD1, TBX21, AR, EGLN2, ZBTB42, RNF2, NCOR1, JUND, ILF3, BRD4, ZNF24, AHR
- Target gene symbol (double-evidenced CRMs): SLC5A3,ITSN1,ATP5PO,MRPS6,AP000311.1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 2
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000249209,
ENSG00000205726,
ENSG00000241837,
ENSG00000243927,
ENSG00000198743,
- Related loop:
chr21:33900000-33925000~~chr21:34075000-34100000,
chr21:33925000-33950000~~chr21:34075000-34100000,
chr21:33967731-33970173~~chr21:34092084-34093399,
chr21:34075000-34100000~~chr21:34175000-34200000,
chr21:34075000-34100000~~chr21:34325000-34350000,