Deatailed information for cohesin site CDBP00417621
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBP00417621
- Locus: chr21-34104657-34104885
- Data sourse: GSE98367, GSE73207
- Cell type: TF-1, Macrophage
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC3,SMC1
- CTCF binding site: non-CTCF CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True
- Compartment: 91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"5_TxWk": 73%,
"15_Quies": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: RUNX1, GLIS1, PGR, ZNF316, FOXA2, NKX2-2, RUNX1T1, SOX2, PAF1, ZFX, XBP1, GTF2B, DUX4, FOXA1, ZBTB33, RELA, ZNF384, OGG1, NEUROD1, GATA4, SMARCA4, RAD21, HIF1A, ATF4, OTX2, GATA3, TAL1, MAX, PBX3, NKX3-1, SUPT5H, AGO2, ZNF449, GATA1, MITF, MED1, NR3C1, CEBPB, TRIM28, SCRT2, TFAP2C, MLLT1, ESR1, TP53, KLF9, C11orf30, ZNF22, CTCF, RBM22, MAFK, SPI1, BCL11A, BAF155, AR, GATA2, REST, NOTCH3, BRD4, SCRT1, FOXP1, ZNF440, PDX1, AHR
- Target gene symbol (double-evidenced CRMs): MRPS6,ITSN1,SLC5A3,SMIM11A,AP000311.1,RCAN1,ATP5PO
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 8
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene: ENSG00000249209, ENSG00000205726, ENSG00000241837, ENSG00000243927, ENSG00000198743, ENSG00000205670, ENSG00000159200,
- Related loop: chr21:33700000-33725000~~chr21:34100000-34125000, chr21:33775000-33800000~~chr21:34100000-34125000, chr21:33900000-33925000~~chr21:34075000-34100000, chr21:33900000-33925000~~chr21:34100000-34125000, chr21:33922677-33925654~~chr21:34108278-34109481, chr21:33925000-33950000~~chr21:34075000-34100000, chr21:34075000-34100000~~chr21:34175000-34200000, chr21:34075000-34100000~~chr21:34325000-34350000, chr21:34100000-34125000~~chr21:34200000-34225000, chr21:34100000-34125000~~chr21:34325000-34350000, chr21:34100000-34125000~~chr21:34350000-34375000, chr21:34100000-34125000~~chr21:34600000-34625000,
Tools:
- Assay
