Deatailed information for cohesin site CDBP00417627
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBP00417627
- Locus: chr21-34116062-34116265
- Data sourse: ENCSR153HNT
- Cell type: K-562
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1
- CTCF binding site: non-CTCF CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True
- Compartment: 91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"5_TxWk": 76%,
"15_Quies": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: CHD8, BCL6, FOXA2, POU5F1, EBF1, XBP1, FOXA1, DDX5, RELA, CREBBP, ZNF384, ARNT, XRCC5, ZSCAN4, ZNF143, SUPT5H, CDX2, CEBPB, TRIM28, SCRT2, SETDB1, HNF4A, PAX8, NCOR1, NOTCH3, FOXA3, NCOR2, GATAD2A, TFAP2C
- Target gene symbol (double-evidenced CRMs): ITSN1,AP000311.1,RCAN1,SMIM11A,MRPS6,ATP5PO
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene: ENSG00000249209, ENSG00000205726, ENSG00000241837, ENSG00000243927, ENSG00000205670, ENSG00000159200,
- Related loop: chr21:33700000-33725000~~chr21:34100000-34125000, chr21:33775000-33800000~~chr21:34100000-34125000, chr21:33900000-33925000~~chr21:34100000-34125000, chr21:34100000-34125000~~chr21:34200000-34225000, chr21:34100000-34125000~~chr21:34325000-34350000, chr21:34100000-34125000~~chr21:34350000-34375000, chr21:34100000-34125000~~chr21:34600000-34625000,
Tools:
- Assay
