- Basic information
- CohesinDB ID: CDBP00417629
- Locus: chr21-34122037-34122493
-
Data sourse: ENCSR230ZWH, ENCSR917QNE
-
Cell type: Liver
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"5_TxWk": 70%,
"7_Enh": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: FOXO1, NFIA, NANOG, FOXA2, MYCN, CEBPA, EBF1, SOX2, GTF2B, FOXA1, HOXB13, KDM1A, ERG, YY1, ATF3, RUNX2, NFIC, GATA4, RAD21, HIF1A, RXRA, OTX2, MAX, NKX3-1, SUPT5H, ZNF143, CDK8, HAND2, ARNTL, TLE3, ESRRA, PIAS1, EZH2, ESR1, C11orf30, GRHL2, MYOD1, PHOX2B, CTCF, RBM22, BAF155, SP1, BCL11A, HNF4A, AR, IRF1, NKX2-5, GATA2, EGLN2, ASH2L, JUND, ZNF316
- Target gene symbol (double-evidenced CRMs): ITSN1,RCAN1,SMIM11A,MRPS6,ATP5PO,AP000311.1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 1
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000249209,
ENSG00000205726,
ENSG00000241837,
ENSG00000243927,
ENSG00000205670,
ENSG00000159200,
- Related loop:
chr21:33675000-33700000~~chr21:34125000-34150000,
chr21:33700000-33725000~~chr21:34100000-34125000,
chr21:33775000-33800000~~chr21:34100000-34125000,
chr21:33900000-33925000~~chr21:34100000-34125000,
chr21:33975000-34000000~~chr21:34125000-34150000,
chr21:34100000-34125000~~chr21:34200000-34225000,
chr21:34100000-34125000~~chr21:34325000-34350000,
chr21:34100000-34125000~~chr21:34350000-34375000,
chr21:34100000-34125000~~chr21:34600000-34625000,
chr21:34125000-34150000~~chr21:34225000-34250000,
chr21:34125000-34150000~~chr21:34250000-34275000,
chr21:34125000-34150000~~chr21:34325000-34350000,
chr21:34125000-34150000~~chr21:34625000-34650000,
chr21:34126294-34127644~~chr21:34200972-34203070,