- Basic information
- CohesinDB ID: CDBP00417632
- Locus: chr21-34128685-34131075
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Data sourse: ENCSR000BLD, ENCSR230ZWH, GSE72082, GSE126634, GSE116868, ENCSR000BLY, ENCSR404BPV, GSE105028, GSE131606, GSE25021, ENCSR917QNE, ENCSR000EFJ, ENCSR000BTU, GSE165895, ENCSR000DZP, GSE143937, ENCSR000BKV, GSE115250, GSE138405, GSE101921, GSE135093, GSE152721, GSE206145-NatGen2015, ENCSR198ZYJ, GSE130135, ENCSR703TNG, GSE106870, GSE94872, GSE130140, GSE98367, ENCSR000BLS, ENCSR000EHW, GSE206145, ENCSR000ECE, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR000BTQ, GSE105004, ENCSR167MTG, GSE131956, GSE129526, ENCSR000HPG, GSE155324, ENCSR153HNT, GSE83726, GSE126990, GSE50893
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Cell type: RH4, CVB-hiPSC, CUTLL1, Liver, TC-32, H9-hESC, RPE, GM2630, HMEC, Fibroblast, Ishikawa, IMR-90, K-562, DKO, HFFc6, H1-hESC, MB157, Lymphoblast, GM12878, GM12891, GBM39, SK-N-SH, Macrophage, HUES64, MCF-7, GM12892, Hela-Kyoto, HCT-116, HEK293T, Hep-G2, Neurons-H1, HUVEC, HCAEC, GM19238, HeLa, HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 26% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.589
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: TSS,TES,Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"7_Enh": 45%,
"5_TxWk": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF660, E2F7, SOX2, NME2, PATZ1, FOXA1, PBX2, ZFHX2, ZNF596, INSM2, NFIC, ZFP64, ZNF362, CTCFL, ZBTB44, PRDM1, IKZF3, CHD7, CBFB, ZNF273, ZNF189, PAX5, MZF1, MITF, ZNF320, SFPQ, ZNF467, ZNF629, MAF, TRIM28, ZNF121, ESR1, OCA2, PITX3, ZNF571, ZNF561, CTCF, JUN, TCF12, BAF155, KLF1, ZNF695, ZBTB20, LMO1, EP300, MNT, E2F6, PRDM4, ZNF528, SMC1, ZNF350, POU2F2, PDX1, TFAP2C, RBPJ, GLIS1, NANOG, CHD8, BRD1, ZSCAN5D, BRD3, POU5F1, ZNF263, MYCN, CDK7, RUNX1T1, ZSCAN21, ZBTB17, ZBTB48, ZNF317, DUX4, ZSCAN5A, ZNF563, ZNF134, SRF, ERG2, ERG, ZBTB21, HOXC5, ZNF341, ZBTB8A, MYC, NFKB2, SMARCA4, ZNF2, RAD21, GRHL3, NKX2-1, GABPA, STAT3, XRCC5, UBN1, NKX3-1, ZNF398, RCOR1, ZNF667, HNRNPH1, ZNF639, ARNTL, NR3C1, CEBPB, KMT2A, CREB1, ZBTB11, EZH2, KLF8, FEZF1, EBF3, ZKSCAN5, SPI1, KLF17, HDAC2, GATA2, MXD3, SIX2, FLI1, SMARCA5, ZNF766, MRTFB, ZNF554, ATF1, RUNX1, ZNF585A, SMC1A, BCL6, NKX2-2, ZNF335, ZNF534, ZFX, SIN3A, AFF4, SMAD3, ZBTB12, SOX13, ZNF654, ERG3, SMARCC1, PRDM10, ZNF549, TWIST1, ZNF35, NOTCH1, ZNF384, PRPF4, RUNX2, CDK6, GATA4, OSR2, ZNF184, ARNT, PBX4, DAXX, ATF2, PRDM9, ZEB2, ZNF518A, SMAD4, PBX3, SP2, ZNF10, CHD1, FOS, MED1, ZXDB, ZNF558, SCRT2, PIAS1, ZNF331, MYB, KLF9, TBX5, SETDB1, RBM22, USF1, BCL11A, SP1, HNF4A, ARID2, NKX2-5, REST, ASH2L, PHIP, BCOR, FOXP1, SMC3, ELL2, STAG2, HMGB1, CXXC4, ZNF394, PAX7, STAG1, MEF2B, TBL1X, RBBP5, CHD2, EBF1, ZNF600, ZNF692, ZSCAN16, WT1, ZNF30, FOXF1, ZNF574, CDK9, HOXB13, KDM1A, YY1, RELA, NEUROD1, JUNB, ZNF148, BRG1, ZNF510, ZNF610, ZIC2, HIF1A, OTX2, GATA3, KLF15, TAL1, MAX, ZNF449, GATA1, PLAG1, TLE3, KLF4, ZFP69B, SP7, ZNF281, KDM5B, TP53, ZBTB6, PKNOX1, ZNF334, MYOD1, EGR2, ZNF140, BRD2, TBX21, BHLHE40, AR, TAF1, ZNF324, EGLN2, ZNF366, ZBTB42, HSF1, MYNN, ZBTB26, SCRT1, BRD4, JUND, MAZ, ZNF24, AHR
- Target gene symbol (double-evidenced CRMs): AP000311.1,MRPS6,ITSN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 1
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000249209,
ENSG00000205726,
ENSG00000243927,
- Related loop:
chr21:33675000-33700000~~chr21:34125000-34150000,
chr21:33700000-33725000~~chr21:34100000-34125000,
chr21:33775000-33800000~~chr21:34100000-34125000,
chr21:33900000-33925000~~chr21:34100000-34125000,
chr21:33975000-34000000~~chr21:34125000-34150000,
chr21:34100000-34125000~~chr21:34200000-34225000,
chr21:34100000-34125000~~chr21:34325000-34350000,
chr21:34100000-34125000~~chr21:34350000-34375000,
chr21:34100000-34125000~~chr21:34600000-34625000,
chr21:34125000-34150000~~chr21:34225000-34250000,
chr21:34125000-34150000~~chr21:34250000-34275000,
chr21:34125000-34150000~~chr21:34325000-34350000,
chr21:34125000-34150000~~chr21:34625000-34650000,
chr21:34126294-34127644~~chr21:34200972-34203070,
chr21:34128276-34130379~~chr21:34200926-34203224,
chr21:34128540-34130047~~chr21:34201503-34202809,
chr21:34128593-34130330~~chr21:34201154-34203236,
chr21:34128593-34130330~~chr21:34351015-34352657,
chr21:34133133-34135105~~chr21:34242552-34244759,
chr21:34133158-34135052~~chr21:34201091-34202966,