- Basic information
- CohesinDB ID: CDBP00417637
- Locus: chr21-34141086-34141814
-
Data sourse: ENCSR230ZWH, ENCSR153HNT, ENCSR917QNE
-
Cell type: K-562, Liver
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"5_TxWk": 62%,
"4_Tx": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: PGR, CHD8, PPARG, FOXA2, POU5F1, CEBPA, TOP2A, ZFX, XBP1, FOXA1, ZBTB33, HNF4G, ERG, YY1, RELA, PRPF4, ATF3, MYC, RUNX2, GATA4, RAD21, GRHL3, HIF1A, ARNT, RXRA, GABPA, PAX5, MAX, CDK8, MED1, CEBPB, NR2F2, ESR1, CTCF, RBM22, SP1, HNF4A, AR, PAX3-FOXO1, REST, HSF1, BRD4, JUND, MAZ, AHR, EED
- Target gene symbol (double-evidenced CRMs): ITSN1,MRPS6,AP000311.1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 3
- Number of somatic mutations (non-coding): 0
- Related genes and loops