- Basic information
- CohesinDB ID: CDBP00417644
- Locus: chr21-34155219-34155571
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Data sourse: GSE206145, GSE67783, ENCSR153HNT
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Cell type: K-562, HSPC, RPE
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 64%,
"5_TxWk": 25%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, AR, NR3C1, MAF, PGR, MYB, AFF4, ZFX, HIF1A, BRD4, ESR1, FOXA1, ZNF334, GABPA, NCOA2, ERG, NFE2, TBX21, LMO1
- Target gene symbol (double-evidenced CRMs): RCAN1,AP000311.1,CLIC6,ITSN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000249209,
ENSG00000205726,
ENSG00000159200,
ENSG00000159212,
- Related loop:
chr21:33675000-33700000~~chr21:34150000-34175000,
chr21:34150000-34175000~~chr21:34250000-34275000,
chr21:34150000-34175000~~chr21:34325000-34350000,
chr21:34150000-34175000~~chr21:34525000-34550000,
chr21:34150000-34175000~~chr21:34600000-34625000,
chr21:34150000-34175000~~chr21:34650000-34675000,
chr21:34150000-34175000~~chr21:42625000-42650000,