- Basic information
- CohesinDB ID: CDBP00417653
- Locus: chr21-34183589-34183774
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Data sourse: ENCSR167MTG, ENCSR153HNT
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Cell type: K-562, Hep-G2
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 62%,
"5_TxWk": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: THAP11, NFIA, BCL6, HMG20A, CEBPA, FOXA2, TOP2A, SOX13, MEIS2, DUX4, FOXA1, SAP130, SP5, PBX2, KDM3A, KDM1A, TFAP4, HNF4G, RARA, NEUROD1, HOMEZ, HIF1A, OTX2, XRCC5, ZNF614, NR2F6, TEAD3, TEAD1, RCOR2, TP53, ELF3, KAT8, MIXL1, TFE3, HNF4A, SOX5, IKZF5, DRAP1, FOXP1, NFIL3, NCOA2, FOXA3, GATAD2A, ETV5, RBPJ
- Target gene symbol (double-evidenced CRMs): ATP5PO,AP000311.1,MRPS6,ITSN1,SLC5A3,RCAN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000249209,
ENSG00000205726,
ENSG00000241837,
ENSG00000243927,
ENSG00000198743,
ENSG00000159200,
- Related loop:
chr21:33900000-33925000~~chr21:34175000-34200000,
chr21:34075000-34100000~~chr21:34175000-34200000,
chr21:34175000-34200000~~chr21:34325000-34350000,
chr21:34175000-34200000~~chr21:34500000-34525000,