- Basic information
- CohesinDB ID: CDBP00417659
- Locus: chr21-34194240-34194522
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Data sourse: GSE105028, ENCSR153HNT
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Cell type: K-562, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 65%,
"5_TxWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, ARNTL, NEUROD1, BRD1, ZNF573, ZFX, OTX2, SPIB, ZNF320
- Target gene symbol (double-evidenced CRMs): SLC5A3,ATP5PO,AP000311.1,MRPS6,ITSN1,RCAN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000249209,
ENSG00000205726,
ENSG00000241837,
ENSG00000243927,
ENSG00000198743,
ENSG00000159200,
- Related loop:
chr21:33900000-33925000~~chr21:34175000-34200000,
chr21:34075000-34100000~~chr21:34175000-34200000,
chr21:34175000-34200000~~chr21:34325000-34350000,
chr21:34175000-34200000~~chr21:34500000-34525000,