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Basic information

CohesinDB ID: CDBP00417660

Locus: chr21-34195280-34195731

Data sourse: ENCSR000BLD, GSE97394, GSE105028, GSE64758

Cell type: H1-hESC, HUES64, H9-hESC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: NIPBL,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: non-Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 91% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 67%, "5_TxWk": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RELA, NANOG, CTNNB1, E2F6, FOXA2, SMAD2, POU5F1, SP1, SOX2, CHD7, RAD21, SMAD3, BCOR, ZNF334, SMAD4, MAX, NIPBL, EP300

Target gene symbol (double-evidenced CRMs): AP000311.1,SLC5A3,ITSN1,ATP5PO,RCAN1,MRPS6

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000249209, ENSG00000205726, ENSG00000241837, ENSG00000243927, ENSG00000198743, ENSG00000159200,

eachgene

Deatailed information for cohesin site CDBP00417660