- Basic information
- CohesinDB ID: CDBP00417665
- Locus: chr21-34207665-34207765
-
Data sourse: GSE120943, GSE98367
-
Cell type: Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 91%,
"14_ReprPCWk": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: AR, FOXA1, ARNT
- Target gene symbol (double-evidenced CRMs): SON,MRPS6,ITSN1,SLC5A3,AP000311.1,ATP5PO,DONSON,RCAN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000159140,
ENSG00000159147,
ENSG00000249209,
ENSG00000205726,
ENSG00000241837,
ENSG00000243927,
ENSG00000198743,
ENSG00000159200,
- Related loop:
chr21:33550000-33575000~~chr21:34200000-34225000,
chr21:33675000-33700000~~chr21:34200000-34225000,
chr21:33700000-33725000~~chr21:34200000-34225000,
chr21:33900000-33925000~~chr21:34200000-34225000,
chr21:33922491-33925917~~chr21:34200938-34203575,
chr21:33922497-33925632~~chr21:34200972-34203070,
chr21:33922723-33925649~~chr21:34201110-34202883,
chr21:33922747-33925710~~chr21:34200971-34203170,
chr21:33922794-33925655~~chr21:34201154-34203236,
chr21:33922795-33925611~~chr21:34201401-34202935,
chr21:33922829-33925686~~chr21:34201098-34202995,
chr21:33923095-33925670~~chr21:34201035-34203141,
chr21:33923120-33925433~~chr21:34201133-34203155,
chr21:33923122-33925635~~chr21:34201046-34202955,
chr21:33923122-33925676~~chr21:34201509-34202753,
chr21:33923143-33925876~~chr21:34201024-34203002,
chr21:33923144-33925455~~chr21:34200887-34202910,
chr21:33923188-33925377~~chr21:34201102-34203387,
chr21:33923267-33925674~~chr21:34201419-34202832,
chr21:33923273-33925677~~chr21:34201261-34203165,
chr21:33925000-33950000~~chr21:34200000-34225000,
chr21:33950000-33975000~~chr21:34200000-34225000,
chr21:33974960-33977785~~chr21:34201385-34202931,
chr21:33975000-34000000~~chr21:34200000-34225000,
chr21:34050000-34075000~~chr21:34200000-34225000,
chr21:34072078-34075520~~chr21:34201046-34202955,
chr21:34100000-34125000~~chr21:34200000-34225000,
chr21:34126294-34127644~~chr21:34200972-34203070,
chr21:34128276-34130379~~chr21:34200926-34203224,
chr21:34128540-34130047~~chr21:34201503-34202809,
chr21:34128593-34130330~~chr21:34201154-34203236,
chr21:34133158-34135052~~chr21:34201091-34202966,
chr21:34200000-34225000~~chr21:34300000-34325000,
chr21:34200000-34225000~~chr21:34325000-34350000,
chr21:34200000-34225000~~chr21:34525000-34550000,
chr21:34200000-34225000~~chr21:34600000-34625000,