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Basic information

CohesinDB ID: CDBP00417667

Locus: chr21-34219966-34220375

Data sourse: GSE67783, GSE72082, ENCSR000BLS, GSE105028, ENCSR054FKH

Cell type: HSPC, Hep-G2, H9-hESC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: SA1,Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 91% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 65%, "14_ReprPCWk": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: FOXO1, POU2F2, CHD8, CEBPA, POU5F1, SOX2, XBP1, HLF, ZNF770, CBX8, HOXB13, ZNF90, CHD7, RAD21, MAX, PRDM14, CDK8, JMJD1C, CEBPB, ZNF334, CTCF, USF1, BCL11A, GATA2, ZIM3, ZNF554, STAG1, TFAP2C

Target gene symbol (double-evidenced CRMs): ITSN1,SLC5A3,ATP5PO,MRPS6,SON,DONSON,RCAN1,AP000311.1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000159140, ENSG00000159147, ENSG00000249209, ENSG00000205726, ENSG00000241837, ENSG00000243927, ENSG00000198743, ENSG00000159200,

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Deatailed information for cohesin site CDBP00417667