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Basic information

CohesinDB ID: CDBP00417670

Locus: chr21-34226162-34226442

Data sourse: GSE67783, GSE86191

Cell type: HCT-116, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 91% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 69%, "14_ReprPCWk": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: NFATC3, FOXO1, ZSCAN5D, MYCN, TBL1X, TOP2A, CRY1, ZFX, NFKBIA, NME2, POU5F1, WT1, ZSCAN5A, ZBTB48, FOXA1, FOXF1, XBP1, ZNF770, SP4, YY1, RELA, ZNF148, MYC, RUNX2, ZFP64, ZKSCAN2, RUNX1T1, SP140, PRDM9, XRCC5, FOXJ2, FOS, IKZF1, DNMT3B, HNRNPH1, MED1, DACH1, CREB1, TFAP2C, STAG1, ZNF3, ESR1, OCA2, L3MBTL2, USF2, JUN, CTCF, USF1, SPI1, BHLHE40, AR, KLF17, PAX3-FOXO1, GATA2, ZBTB7A, REST, ZNF263, RNF2, BRD4, MAZ, SMC3, SALL2, ZNF316

Target gene symbol (double-evidenced CRMs): ATP5PO,ITSN1,AP000311.1,MRPS6,RCAN1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000249209, ENSG00000205726, ENSG00000241837, ENSG00000243927, ENSG00000159200,

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Deatailed information for cohesin site CDBP00417670