- Basic information
- CohesinDB ID: CDBP00417671
- Locus: chr21-34227266-34227720
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Data sourse: GSE206145, GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116, HSPC, RPE
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Mau2,SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 63%,
"7_Enh": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFATC3, FOXO1, ZSCAN5D, MYCN, TBL1X, TOP2A, CRY1, ZFX, NFKBIA, NME2, POU5F1, WT1, ZSCAN5A, ZBTB48, FOXA1, FOXF1, XBP1, ZNF770, SP4, YY1, RELA, ZNF148, MYC, RUNX2, ZFP64, ZKSCAN2, RUNX1T1, SP140, PRDM9, XRCC5, FOXJ2, FOS, IKZF1, DNMT3B, HNRNPH1, MED1, DACH1, CREB1, TFAP2C, STAG1, ZNF3, ESR1, OCA2, L3MBTL2, USF2, JUN, CTCF, USF1, SPI1, BHLHE40, AR, KLF17, PAX3-FOXO1, GATA2, ZBTB7A, REST, ZNF263, RNF2, BRD4, MAZ, SMC3, SALL2, ZNF316
- Target gene symbol (double-evidenced CRMs): ITSN1,AP000311.1,ATP5PO,MRPS6,RCAN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000249209,
ENSG00000205726,
ENSG00000241837,
ENSG00000243927,
ENSG00000159200,
- Related loop:
chr21:33550000-33575000~~chr21:34200000-34225000,
chr21:33675000-33700000~~chr21:34200000-34225000,
chr21:33700000-33725000~~chr21:34200000-34225000,
chr21:33900000-33925000~~chr21:34200000-34225000,
chr21:33900000-33925000~~chr21:34225000-34250000,
chr21:33922506-33925702~~chr21:34231067-34232322,
chr21:33922678-33925692~~chr21:34230884-34232496,
chr21:33922803-33925652~~chr21:34230934-34232390,
chr21:33922807-33925639~~chr21:34230926-34232381,
chr21:33923163-33925652~~chr21:34230928-34232534,
chr21:33923273-33925677~~chr21:34231086-34232306,
chr21:33923351-33925672~~chr21:34231078-34232324,
chr21:33925000-33950000~~chr21:34200000-34225000,
chr21:33925000-33950000~~chr21:34225000-34250000,
chr21:33950000-33975000~~chr21:34200000-34225000,
chr21:33975000-34000000~~chr21:34200000-34225000,
chr21:34050000-34075000~~chr21:34200000-34225000,
chr21:34100000-34125000~~chr21:34200000-34225000,
chr21:34125000-34150000~~chr21:34225000-34250000,
chr21:34200000-34225000~~chr21:34300000-34325000,
chr21:34200000-34225000~~chr21:34325000-34350000,
chr21:34200000-34225000~~chr21:34525000-34550000,
chr21:34200000-34225000~~chr21:34600000-34625000,
chr21:34225000-34250000~~chr21:34325000-34350000,
chr21:34225000-34250000~~chr21:34500000-34525000,
chr21:7750000-7775000~~chr21:34225000-34250000,