- Basic information
- CohesinDB ID: CDBP00417675
- Locus: chr21-34235033-34236369
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Data sourse: GSE126634, GSE152721, ENCSR198ZYJ, ENCSR404BPV
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Cell type: Neurons-H1, HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC3,Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 70%,
"14_ReprPCWk": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CEBPB, MAFG, ZNF621, NFE2, ZNF316, HAND2
- Target gene symbol (double-evidenced CRMs): MRPS6,ATP5PO,AP000311.1,ITSN1,RCAN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000249209,
ENSG00000205726,
ENSG00000241837,
ENSG00000243927,
ENSG00000159200,
- Related loop:
chr21:33900000-33925000~~chr21:34225000-34250000,
chr21:33922506-33925702~~chr21:34231067-34232322,
chr21:33922678-33925692~~chr21:34230884-34232496,
chr21:33922803-33925652~~chr21:34230934-34232390,
chr21:33922807-33925639~~chr21:34230926-34232381,
chr21:33923163-33925652~~chr21:34230928-34232534,
chr21:33923273-33925677~~chr21:34231086-34232306,
chr21:33923351-33925672~~chr21:34231078-34232324,
chr21:33925000-33950000~~chr21:34225000-34250000,
chr21:34125000-34150000~~chr21:34225000-34250000,
chr21:34225000-34250000~~chr21:34325000-34350000,
chr21:34225000-34250000~~chr21:34500000-34525000,
chr21:7750000-7775000~~chr21:34225000-34250000,