- Basic information
- CohesinDB ID: CDBP00417678
- Locus: chr21-34242589-34245639
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Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR917QNE, GSE115602, GSE93080, GSE67783, GSE86191, GSE36578, GSE101921, ENCSR806UKK, GSE51234, GSE120943, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, ENCSR000EEG, ENCSR338DUC, GSE130140, GSE115248, ENCSR247LSH, ENCSR676MJK, GSE155324, ENCSR054FKH, GSE83726, GSE126755, ENCSR748MVX, ENCSR000ECS, GSE131577, ENCSR000BLD, GSE38411, GSE104888, GSE126634, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR537EFT, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE115250, GSE76893, GSE145327, GSE76815, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE38395, GSE131956, GSE110061, ENCSR000HPG, GSE111913, ENCSR335RKQ, ENCSR000EDE, GSE50893, GSE206145-GSE177045, GSE72082, ENCSR501LQA, GSE116868, GSE105028, ENCSR000EDW, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE155828, ENCSR981FDC, ENCSR807WAC, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR153HNT, GSE68388, GSE126990
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Cell type: MDM, RH4, GM10847, GM2610, CVB-hiPSC, GM19240, OCI-AML-3, HSPC, CUTLL1, CVI-hiPSC, Liver, GP5d, Transformed-RPE1, TC-32, HuCC-T1, H9-hESC, RPE, GM2630, HMEC, Fibroblast, HEKn, THP-1, Ishikawa, Kelly, GM12890, HeLa-S3, hLCL, GM2255, IMR-90, BCBL-1, K-562, GM18486, DKO, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, MB157, Lymphoblast, GM12878, GM12891, GM2588, GBM39, SK-N-SH, GM19239, HeLa-Tet-On, GM19193, RT-112, HAP1, GM19099, HUES64, Macrophage, GM12892, MCF-7, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, MCF-10A, A-549, HUVEC, HCAEC, GM19238, BGO3, TC-71, Neutrophil, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 66% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.222
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3ac,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 80%,
"14_ReprPCWk": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, FOXA1, SUZ12, KDM3A, ZC3H8, CTCFL, RUNX3, IKZF3, ZNF444, TEAD1, TRIM28, NFE2L2, ESR1, USF2, CTCF, JUN, KLF1, MNT, RYBP, E2F6, IRF4, SMC1, TEAD4, ZNF175, TFAP2C, POU2F2, MYCN, ZBTB48, ZSCAN5A, SRF, SAP130, ERG, MYC, RAD21, GRHL3, RXRA, NKX2-1, XRCC5, NKX3-1, IKZF1, NFE2, NR2F6, ESRRA, CREB1, SPI1, GATA2, FLI1, SMARCA5, MRTFB, THAP11, SMC1A, BCL6, ZFX, SMAD3, ZNF654, ZNF770, TRIM22, ZBTB2, IRF2, RUNX2, PRDM9, HMGXB4, TEAD3, DIDO1, PIAS1, SMAD1, ZNF3, KLF9, USF1, BCL11A, HNF4A, IKZF5, REST, SMC3, STAG2, STAG1, FOXA2, MTA3, WT1, MEF2C, HOXB13, ZKSCAN1, YY1, RELA, ZFP36, HIF1A, MAX, ZNF143, TCF7L2, KDM5B, TP53, ARID4B, AR, ZNF579, EGLN2, RB1, HSF1, RNF2, IKZF2, BRD4
- Target gene symbol (double-evidenced CRMs): RCAN1,AP000311.1,MRPS6,ATP5PO,ITSN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000249209,
ENSG00000205726,
ENSG00000241837,
ENSG00000243927,
ENSG00000159200,
- Related loop:
chr21:33675000-33700000~~chr21:34250000-34275000,
chr21:33700000-33725000~~chr21:34250000-34275000,
chr21:33775000-33800000~~chr21:34250000-34275000,
chr21:33900000-33925000~~chr21:34225000-34250000,
chr21:33900000-33925000~~chr21:34250000-34275000,
chr21:33922474-33925874~~chr21:34242616-34244890,
chr21:33922478-33925703~~chr21:34242552-34244759,
chr21:33922482-33925641~~chr21:34242769-34244742,
chr21:33922485-33925689~~chr21:34242598-34244771,
chr21:33922491-33925917~~chr21:34242559-34244950,
chr21:33922497-33925632~~chr21:34242565-34244736,
chr21:33922506-33925702~~chr21:34243018-34244439,
chr21:33922677-33925654~~chr21:34242517-34244715,
chr21:33922678-33925692~~chr21:34242813-34244834,
chr21:33922723-33925649~~chr21:34242578-34244694,
chr21:33922731-33925983~~chr21:34242565-34244760,
chr21:33922774-33925646~~chr21:34243082-34244282,
chr21:33922794-33925655~~chr21:34242558-34244863,
chr21:33922795-33925611~~chr21:34243084-34244434,
chr21:33922795-33925867~~chr21:34242537-34244933,
chr21:33922803-33925652~~chr21:34243116-34244483,
chr21:33922807-33925639~~chr21:34242597-34244750,
chr21:33922811-33925629~~chr21:34242516-34244705,
chr21:33922829-33925686~~chr21:34242574-34244710,
chr21:33922904-33925886~~chr21:34242518-34244755,
chr21:33923095-33925670~~chr21:34242647-34244858,
chr21:33923120-33925433~~chr21:34242660-34244787,
chr21:33923122-33925635~~chr21:34242849-34244739,
chr21:33923122-33925657~~chr21:34242859-34244409,
chr21:33923122-33925676~~chr21:34243033-34244588,
chr21:33923143-33925876~~chr21:34242626-34244598,
chr21:33923144-33925455~~chr21:34243074-34244709,
chr21:33923160-33925641~~chr21:34242525-34244685,
chr21:33923163-33925652~~chr21:34242624-34244691,
chr21:33923167-33925446~~chr21:34243125-34244618,
chr21:33923181-33925620~~chr21:34242939-34244436,
chr21:33923185-33925313~~chr21:34242635-34244717,
chr21:33923186-33925791~~chr21:34242603-34244424,
chr21:33923188-33925377~~chr21:34243095-34244510,
chr21:33923188-33925626~~chr21:34242831-34244481,
chr21:33923203-33925479~~chr21:34242612-34244684,
chr21:33923267-33925674~~chr21:34243002-34244459,
chr21:33923273-33925677~~chr21:34242680-34244482,
chr21:33923297-33925666~~chr21:34243033-34244434,
chr21:33923351-33925672~~chr21:34243120-34244473,
chr21:33923355-33925607~~chr21:34243041-34244462,
chr21:33923428-33925646~~chr21:34243111-34244377,
chr21:33925000-33950000~~chr21:34225000-34250000,
chr21:34050000-34075000~~chr21:34250000-34275000,
chr21:34125000-34150000~~chr21:34225000-34250000,
chr21:34125000-34150000~~chr21:34250000-34275000,
chr21:34133133-34135105~~chr21:34242552-34244759,
chr21:34150000-34175000~~chr21:34250000-34275000,
chr21:34225000-34250000~~chr21:34325000-34350000,
chr21:34225000-34250000~~chr21:34500000-34525000,
chr21:34250000-34275000~~chr21:34500000-34525000,
chr21:7750000-7775000~~chr21:34225000-34250000,