- Basic information
- CohesinDB ID: CDBP00417681
- Locus: chr21-34264956-34265232
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Data sourse: ENCSR000BLD, GSE116344, ENCSR000ECE, GSE105028
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Cell type: H1-hESC, RH4, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
65% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 73%,
"14_ReprPCWk": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PAX3-FOXO1, RELA, SFPQ, CEBPB, EBF1, RAD21, PRDM1, ARNT, ZFX, DUX4, OTX2, NKX2-1, STAT3, GABPB1, CTCF, USF1, SPI1, TFAP2C
- Target gene symbol (double-evidenced CRMs): MRPS6,AP000311.1,ATP5PO,RCAN1,ITSN1,SLC5A3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000249209,
ENSG00000205726,
ENSG00000241837,
ENSG00000243927,
ENSG00000198743,
ENSG00000159200,
- Related loop:
chr21:33675000-33700000~~chr21:34250000-34275000,
chr21:33700000-33725000~~chr21:34250000-34275000,
chr21:33775000-33800000~~chr21:34250000-34275000,
chr21:33900000-33925000~~chr21:34250000-34275000,
chr21:34050000-34075000~~chr21:34250000-34275000,
chr21:34125000-34150000~~chr21:34250000-34275000,
chr21:34150000-34175000~~chr21:34250000-34275000,
chr21:34250000-34275000~~chr21:34500000-34525000,