- Basic information
- CohesinDB ID: CDBP00417684
- Locus: chr21-34271378-34273054
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Data sourse: GSE126634, GSE152721
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Cell type: HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
65% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 62%,
"14_ReprPCWk": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, CBFA2T2, CHD8, PPARG, POU5F1, SOX2, XBP1, DUX4, FOXA1, CBX8, SMARCC1, RELA, BMI1, SMARCA4, RAD21, ZFP36, GRHL3, MORC2, ATF2, GABPA, STAT3, TAL1, MED1, CBX2, CEBPG, CEBPB, JMJD1C, NR2F2, EZH2, PHOX2B, CTCF, SP1, SPI1, AR, GATA2, ATF7, RNF2, JUND, BRD4, ZNF528
- Target gene symbol (double-evidenced CRMs): SLC5A3,ITSN1,AP000311.1,RCAN1,ATP5PO,MRPS6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000249209,
ENSG00000205726,
ENSG00000241837,
ENSG00000243927,
ENSG00000198743,
ENSG00000159200,
- Related loop:
chr21:33675000-33700000~~chr21:34250000-34275000,
chr21:33700000-33725000~~chr21:34250000-34275000,
chr21:33775000-33800000~~chr21:34250000-34275000,
chr21:33900000-33925000~~chr21:34250000-34275000,
chr21:34050000-34075000~~chr21:34250000-34275000,
chr21:34125000-34150000~~chr21:34250000-34275000,
chr21:34150000-34175000~~chr21:34250000-34275000,
chr21:34250000-34275000~~chr21:34500000-34525000,