- Basic information
- CohesinDB ID: CDBP00417694
- Locus: chr21-34312999-34314726
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Data sourse: GSE67783, GSE126634, GSE105028, GSE101921, GSE152721, GSE206145-NatGen2015, GSE206145, ENCSR153HNT, GSE68388
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Cell type: RPE, Fibroblast, HCAEC, HSPC, K-562, HAP1, HuCC-T1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.911
- Subunit: SA1,Rad21,SMC1,SA2,Mau2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
65% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 54%,
"14_ReprPCWk": 29%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, BRD1, FOXA2, MYCN, TBL1X, KDM4C, ZFX, TEAD4, XBP1, STAG2, SMAD3, WT1, FOXA1, CBX8, ERG, RELA, JUNB, RUNX2, MYC, ARNT, STAT3, TAL1, MAX, ZNF143, CBX2, ZFP69B, NR3C1, SCRT2, SNAI2, KDM5B, EZH2, TP53, OCA2, MYOD1, JUN, BRD2, CTCF, AR, E2F6, FLI1, NOTCH3, SCRT1, E2F1, MAZ, SMC1, MRTFB, SMC3, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): RCAN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops