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Basic information

CohesinDB ID: CDBP00417697

Locus: chr21-34323624-34324142

Data sourse: ENCSR000EAC, ENCSR000BKV, GSE86191, ENCSR000ECE, ENCSR000BMY, GSE50893

Cell type: GM12892, GM2630, H1-hESC, HCT-116, SNYDER, GM2610, GM12878, GM12891, K-562, GM19239, GM18486

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 3% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.878

Subunit: SA1,Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: TES

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 65% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 56%, "14_ReprPCWk": 26%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RELA, POU2F2, MYC, TRIM28, RAD21, EZH2, ZFX, ZNF334, TAL1, CTCF, SPI1

Target gene symbol (double-evidenced CRMs): RCAN1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000159200,

eachgene

Deatailed information for cohesin site CDBP00417697