Browse_each

Basic information

CohesinDB ID: CDBP00417699

Locus: chr21-34332972-34333971

Data sourse: GSE67783, GSE116868, GSE206145, GSE206145-NatGen2015, ENCSR153HNT, GSE165895

Cell type: RPE, Fibroblast, MB157, K-562, HSPC, HFFc6

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 2% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.933

Subunit: NIPBL,SA1,Rad21,SMC1,Mau2

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 65% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 55%, "7_Enh": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: FOXO1, SMC1A, CEBPA, HMG20A, RBBP5, POU5F1, SOX13, ZFX, ID3, XBP1, ZNF263, DUX4, WT1, ZSCAN5A, FOXA1, CDK9, SMARCC1, IRF2, ZNF384, AHR, RUNX2, MYC, SMARCA4, ARNT, HIF1A, SOX11, GATA3, STAT3, XRCC5, SOX10, CDK8, MITF, HNRNPH1, ZNF736, CEBPB, TEAD3, NCOA3, MYB, SCRT2, EZH2, RCOR2, TP53, TP73, CTCF, BCL11A, SPI1, IRF1, GATA2, IRF4, RNF2, SCRT1, BRD4, CLOCK, MAZ, STAG1, TFAP2C

Target gene symbol (double-evidenced CRMs): RCAN1,CBR1,URB1,SLC5A3,AP000311.1,MRPS6,SETD4,ATP5PO,ITSN1,CRYZL1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000142207, ENSG00000249209, ENSG00000205758, ENSG00000205726, ENSG00000241837, ENSG00000243927, ENSG00000198743, ENSG00000159200, ENSG00000185917, ENSG00000159228,

eachgene

Deatailed information for cohesin site CDBP00417699