- Basic information
- CohesinDB ID: CDBP00417703
- Locus: chr21-34341939-34344393
-
Data sourse: GSE67783, GSE86191, GSE206145, GSE206145-NatGen2015, ENCSR153HNT, GSE50893
-
Cell type: RPE, GM12892, Fibroblast, HCT-116, K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: Mau2,SA1,Rad21,SA2
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
65% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 38%,
"14_ReprPCWk": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: FOXO1, FOSL1, PGR, SOX2, NME2, FOXA1, HLF, RXRB, ATF3, NFIC, ZBTB5, CHD7, ZNF736, TEAD1, TRIM28, ZNF573, ETV1, ZNF23, USF2, CTCF, TCF12, JUN, EP300, SOX5, ZNF302, ZNF528, FOXA3, TFAP2C, GLIS1, POU2F2, BRD1, ZSCAN5D, MYCN, ZNF263, TOP2A, ID3, CTBP1, ZBTB17, ZBTB48, ZSCAN5A, SAP130, ZNF300, MYC, SMARCA4, HOMEZ, RAD21, RXRA, APC, STAT3, IKZF1, RCOR1, NR3C1, CEBPB, EZH2, GRHL2, SPI1, TFE3, ZNF257, GATA2, FLI1, MXI1, MRTFB, NFIL3, ZFX, TET2, ZNF770, CBX8, SMARCC1, PRDM10, TWIST1, RARA, RUNX2, GATA4, ARNT, SMAD4, PBX3, FOS, TEAD3, ZNF3, SETDB1, SP1, IKZF5, REST, FOXP1, STAG1, TRP47, TBL1X, FOXA2, WT1, FOXF1, HOXB13, YY1, RELA, JUNB, MCM3, SP140, ZFP36, HIF1A, GATA3, ZNF519, TAL1, MAX, GATA1, ZNF143, CBX2, PLAG1, NR2F2, NEUROG2, ZNF334, MYOD1, T, ELF3, BHLHE40, AR, PAX3-FOXO1, EGLN2, HEXIM1, HSF1, RNF2, BRD4, MAZ, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): SLC5A3,RCAN1,ITSN1,URB1,CRYZL1,SETD4,MRPS6,CBR1,ATP5PO,AP000311.1
- Function elements
- Human SNPs: Joint_mobility_(Beighton_score)
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000142207,
ENSG00000249209,
ENSG00000205758,
ENSG00000205726,
ENSG00000241837,
ENSG00000243927,
ENSG00000198743,
ENSG00000159200,
ENSG00000185917,
ENSG00000159228,
- Related loop:
chr21:32350000-32375000~~chr21:34325000-34350000,
chr21:33625000-33650000~~chr21:34325000-34350000,
chr21:33675000-33700000~~chr21:34325000-34350000,
chr21:33700000-33725000~~chr21:34325000-34350000,
chr21:33850000-33875000~~chr21:34325000-34350000,
chr21:33875000-33900000~~chr21:34325000-34350000,
chr21:33900000-33925000~~chr21:34325000-34350000,
chr21:33914721-33916686~~chr21:34347220-34348816,
chr21:33914900-33916542~~chr21:34347151-34348865,
chr21:33915150-33916451~~chr21:34347188-34348864,
chr21:33922474-33925874~~chr21:34347201-34348842,
chr21:33922478-33925703~~chr21:34347178-34348870,
chr21:33922482-33925641~~chr21:34347190-34348909,
chr21:33922485-33925689~~chr21:34347190-34348835,
chr21:33922491-33925917~~chr21:34347170-34348852,
chr21:33922497-33925632~~chr21:34347223-34348899,
chr21:33922506-33925702~~chr21:34347170-34348764,
chr21:33922548-33925984~~chr21:34347119-34348821,
chr21:33922677-33925654~~chr21:34347167-34348827,
chr21:33922678-33925692~~chr21:34347169-34348885,
chr21:33922723-33925649~~chr21:34347391-34348852,
chr21:33922731-33925983~~chr21:34347158-34348864,
chr21:33922747-33925710~~chr21:34347181-34348879,
chr21:33922754-33925647~~chr21:34347210-34348841,
chr21:33922769-33925566~~chr21:34347241-34348855,
chr21:33922774-33925646~~chr21:34347428-34348867,
chr21:33922793-33925695~~chr21:34347215-34348903,
chr21:33922794-33925655~~chr21:34347200-34348863,
chr21:33922795-33925611~~chr21:34347197-34348834,
chr21:33922795-33925867~~chr21:34347175-34348883,
chr21:33922799-33925652~~chr21:34347293-34348845,
chr21:33922803-33925652~~chr21:34347392-34348882,
chr21:33922807-33925639~~chr21:34347146-34348894,
chr21:33922811-33925629~~chr21:34347145-34348885,
chr21:33922829-33925686~~chr21:34347151-34348865,
chr21:33922904-33925886~~chr21:34347187-34348858,
chr21:33923095-33925670~~chr21:34347260-34348894,
chr21:33923111-33925648~~chr21:34347155-34348864,
chr21:33923120-33925433~~chr21:34347170-34348883,
chr21:33923122-33925635~~chr21:34347205-34348811,
chr21:33923122-33925657~~chr21:34347222-34348883,
chr21:33923122-33925676~~chr21:34347225-34348729,
chr21:33923143-33925876~~chr21:34347195-34348845,
chr21:33923144-33925455~~chr21:34347211-34348885,
chr21:33923159-33925198~~chr21:34347399-34348854,
chr21:33923160-33925641~~chr21:34347152-34348883,
chr21:33923163-33925652~~chr21:34347210-34348885,
chr21:33923165-33925484~~chr21:34347236-34348799,
chr21:33923166-33925650~~chr21:34347188-34348864,
chr21:33923167-33925446~~chr21:34347227-34348815,
chr21:33923179-33925760~~chr21:34347132-34348816,
chr21:33923181-33925620~~chr21:34347248-34348899,
chr21:33923185-33925313~~chr21:34347200-34348835,
chr21:33923186-33925791~~chr21:34347445-34348815,
chr21:33923188-33925377~~chr21:34347220-34348816,
chr21:33923188-33925626~~chr21:34347240-34348831,
chr21:33923225-33925528~~chr21:34347216-34348815,
chr21:33923267-33925674~~chr21:34347297-34349084,
chr21:33923273-33925677~~chr21:34347284-34348765,
chr21:33923297-33925666~~chr21:34347324-34348725,
chr21:33923337-33925670~~chr21:34347311-34348720,
chr21:33923351-33925672~~chr21:34347307-34348721,
chr21:33923354-33925674~~chr21:34347309-34348720,
chr21:33923355-33925607~~chr21:34347336-34348747,
chr21:33923364-33925673~~chr21:34347314-34348702,
chr21:33923517-33925311~~chr21:34347480-34348692,
chr21:33925000-33950000~~chr21:34325000-34350000,
chr21:33931089-33932296~~chr21:34347399-34348854,
chr21:33931118-33933007~~chr21:34347170-34348764,
chr21:33950000-33975000~~chr21:34325000-34350000,
chr21:33975000-34000000~~chr21:34325000-34350000,
chr21:34018536-34021454~~chr21:34347284-34348765,
chr21:34018567-34021276~~chr21:34347169-34348885,
chr21:34050000-34075000~~chr21:34325000-34350000,
chr21:34072033-34075564~~chr21:34347215-34348903,
chr21:34072203-34075604~~chr21:34347152-34348883,
chr21:34072301-34075531~~chr21:34347428-34348867,
chr21:34072459-34075273~~chr21:34347146-34348894,
chr21:34073796-34075161~~chr21:34347195-34348845,
chr21:34075000-34100000~~chr21:34325000-34350000,
chr21:34100000-34125000~~chr21:34325000-34350000,
chr21:34125000-34150000~~chr21:34325000-34350000,
chr21:34150000-34175000~~chr21:34325000-34350000,
chr21:34175000-34200000~~chr21:34325000-34350000,
chr21:34200000-34225000~~chr21:34325000-34350000,
chr21:34225000-34250000~~chr21:34325000-34350000,
chr21:34325000-34350000~~chr21:34500000-34525000,
chr21:34325000-34350000~~chr21:34525000-34550000,
chr21:34325000-34350000~~chr21:34600000-34625000,
chr21:34325000-34350000~~chr21:34625000-34650000,
chr21:34325000-34350000~~chr21:35725000-35750000,
chr21:34325000-34350000~~chr21:36075000-36100000,
chr21:7750000-7775000~~chr21:34325000-34350000,