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Basic information

CohesinDB ID: CDBP00417738

Locus: chr21-34501761-34502015

Data sourse: ENCSR167MTG, GSE72082, ENCSR000BLS

Cell type: Hep-G2

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: SA1,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 93% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 61%, "14_ReprPCWk": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: SKI, NFIA, BCL6, PPARG, HMG20A, FOXA2, CREM, RBPJ, SOX13, ZFX, MIER2, CEBPA, FOXA1, SRF, TBX3, SAP130, SP5, RXRB, ZNF580, SMARCC1, HNF4G, KDM1A, TFAP4, ERG, RARA, TSC22D4, THRB, ETS1, RAD21, ARNT, GATAD2A, RXRA, ATF2, SMAD4, MXD4, XRCC5, PAX5, ZNF614, NR2F6, CEBPG, CEBPB, TEAD3, ZEB1, NR2F2, ELF1, CREB1, TEAD1, CCAR2, TBL1XR1, RCOR2, JUN, CTCF, SP1, EP300, TFE3, HNF4A, ARID4B, SOX5, ARID2, HDAC2, REST, ZNF644, DMAP1, ATF7, ZBTB26, DRAP1, JUND, FOXP1, NFIL3, TEAD4, FOXA3, ZNF175, GTF2F1, ETV5, AHR

Target gene symbol (double-evidenced CRMs): SMIM11A,ITSN1,RCAN1,SLC5A3,ATP5PO,MRPS6,SETD4,AP000311.1,RUNX1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000249209, ENSG00000205726, ENSG00000241837, ENSG00000243927, ENSG00000198743, ENSG00000205670, ENSG00000159200, ENSG00000159216, ENSG00000185917,

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Deatailed information for cohesin site CDBP00417738