- Basic information
- CohesinDB ID: CDBP00417739
- Locus: chr21-34504010-34504283
-
Data sourse: GSE120943, GSE67783
-
Cell type: Monocytes, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
93% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 63%,
"14_ReprPCWk": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: AR, CEBPB, CHD8, CEBPA, TOP2A, ZFX, SP2, XBP1, TCF12, YY1
- Target gene symbol (double-evidenced CRMs): SLC5A3,ATP5PO,SETD4,ITSN1,SMIM11A,RUNX1,RCAN1,AP000311.1,MRPS6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000249209,
ENSG00000205726,
ENSG00000241837,
ENSG00000243927,
ENSG00000198743,
ENSG00000205670,
ENSG00000159200,
ENSG00000159216,
ENSG00000185917,
- Related loop:
chr21:14975000-15000000~~chr21:34500000-34525000,
chr21:32375000-32400000~~chr21:34500000-34525000,
chr21:33675000-33700000~~chr21:34500000-34525000,
chr21:33900000-33925000~~chr21:34500000-34525000,
chr21:33950000-33975000~~chr21:34500000-34525000,
chr21:34025000-34050000~~chr21:34500000-34525000,
chr21:34050000-34075000~~chr21:34500000-34525000,
chr21:34175000-34200000~~chr21:34500000-34525000,
chr21:34225000-34250000~~chr21:34500000-34525000,
chr21:34250000-34275000~~chr21:34500000-34525000,
chr21:34300000-34325000~~chr21:34500000-34525000,
chr21:34325000-34350000~~chr21:34500000-34525000,
chr21:34350000-34375000~~chr21:34500000-34525000,
chr21:34500000-34525000~~chr21:34600000-34625000,
chr21:34500000-34525000~~chr21:34625000-34650000,
chr21:34500000-34525000~~chr21:34850000-34875000,
chr21:34500000-34525000~~chr21:34875000-34900000,
chr21:34500000-34525000~~chr21:35025000-35050000,
chr21:34500000-34525000~~chr21:35600000-35625000,
chr21:34500000-34525000~~chr21:35825000-35850000,
chr21:34500000-34525000~~chr21:35925000-35950000,
chr21:34500000-34525000~~chr21:35950000-35975000,
chr21:34500000-34525000~~chr21:36025000-36050000,
chr21:34508569-34511502~~chr21:34543343-34545597,
chr21:34508611-34511592~~chr21:34582165-34583641,
chr21:34508611-34511592~~chr21:34602342-34604182,
chr21:34508615-34511741~~chr21:34581754-34584168,
chr21:34508615-34511741~~chr21:34602083-34604469,
chr21:34508615-34511741~~chr21:34629492-34631931,
chr21:34508625-34511759~~chr21:34602034-34604261,
chr21:34508630-34511686~~chr21:34581785-34584141,
chr21:34508630-34511686~~chr21:34602101-34604451,
chr21:34508630-34511686~~chr21:34629744-34631944,
chr21:34508642-34511774~~chr21:34602014-34604415,
chr21:34508649-34511612~~chr21:34581736-34583658,
chr21:34508649-34511612~~chr21:34602089-34603843,
chr21:34508650-34511829~~chr21:34581759-34584645,
chr21:34508650-34511829~~chr21:34601700-34604436,
chr21:34508652-34511719~~chr21:34581526-34583641,
chr21:34508652-34511719~~chr21:34601693-34604449,
chr21:34508655-34511778~~chr21:34581832-34584557,
chr21:34508655-34511778~~chr21:34601712-34604382,
chr21:34508655-34511778~~chr21:34629535-34631912,
chr21:34508676-34511542~~chr21:34582256-34583632,
chr21:34508676-34511542~~chr21:34602331-34604108,
chr21:34508680-34511707~~chr21:34581775-34584106,
chr21:34508680-34511707~~chr21:34602032-34604402,
chr21:34508680-34511707~~chr21:34629707-34631944,
chr21:34508685-34511696~~chr21:34602075-34604337,
chr21:34508686-34511802~~chr21:34581746-34584166,
chr21:34508686-34511802~~chr21:34601682-34604464,
chr21:34508701-34511712~~chr21:34601764-34604306,
chr21:34508705-34511720~~chr21:34581803-34583823,
chr21:34508705-34511720~~chr21:34602198-34604029,
chr21:34508719-34511659~~chr21:34581890-34583607,
chr21:34508750-34512867~~chr21:34543315-34545088,
chr21:34508750-34512867~~chr21:34582003-34583678,
chr21:34508750-34512867~~chr21:34602325-34604285,
chr21:34508753-34511486~~chr21:34582204-34583628,
chr21:34508753-34511486~~chr21:34602350-34604114,
chr21:34508768-34511838~~chr21:34602064-34604440,
chr21:34508793-34511654~~chr21:34543206-34545079,
chr21:34508793-34511654~~chr21:34581884-34584059,
chr21:34508793-34511654~~chr21:34602357-34604365,
chr21:34508793-34511654~~chr21:34614521-34616227,
chr21:34508793-34511654~~chr21:34629528-34631714,
chr21:7800000-7825000~~chr21:34500000-34525000,