- Basic information
- CohesinDB ID: CDBP00417742
- Locus: chr21-34508107-34513689
-
Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR000DYE, ENCSR917QNE, GSE115602, GSE139435, GSE93080, GSE67783, GSE86191, GSE36578, GSE101921, ENCSR806UKK, GSE51234, GSE120943, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, GSE118494, ENCSR000EEG, ENCSR338DUC, ENCSR247LSH, GSE105004, ENCSR676MJK, GSE155324, ENCSR054FKH, GSE83726, GSE126755, ENCSR748MVX, ENCSR000ECS, GSE131577, ENCSR000BLD, GSE38411, GSE104888, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR537EFT, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE122299, GSE115250, GSE76893, GSE145327, GSE76815, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE38395, GSE131956, GSE110061, ENCSR000HPG, GSE111913, ENCSR335RKQ, ENCSR000EDE, GSE50893, ENCSR481YWD, GSE206145-GSE177045, GSE72082, ENCSR501LQA, GSE116868, GSE105028, ENCSR000EDW, GSE165895, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE155828, ENCSR981FDC, ENCSR807WAC, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR153HNT, GSE68388, GSE126990
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Cell type: MDM, RH4, GM10847, GM2610, SLK, CVB-hiPSC, GM19240, OCI-AML-3, HSPC, CVI-hiPSC, Liver, GP5d, Transformed-RPE1, TC-32, HuCC-T1, B-cell, H9-hESC, GM2630, HMEC, Fibroblast, RPE, HEKn, THP-1, Ishikawa, GM12890, HeLa-S3, hLCL, GM2255, IMR-90, BCBL-1, K-562, GM18486, DKO, HFFc6, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, Leukemia-SEM, MB157, Lymphoblast, GM12878, GM12891, GM2588, GBM39, HUES9, SK-N-SH, GM19239, CNCCs-H9ESC, GM19193, HeLa-Tet-On, RT-112, HAP1, GM19099, HUES64, Macrophage, GM12892, MCF-7, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, MCF-10A, A-549, HUVEC, HCAEC, GM19238, HeLa, BGO3, TC-71, Neutrophil, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 79% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.167
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3ac,SA2,Mau2,SMC3
-
CTCF binding site: CTCF
CTCF motif: True
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
93% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"5_TxWk": 29%,
"15_Quies": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: POU2F2, SMC1A, CBX1, ZSCAN5D, POU5F1, MYCN, CBX3, CREM, ZFX, STAG2, GTF2B, ZBTB48, WT1, GTF2F1, ZSCAN5A, SRF, ZNF134, PRDM10, KDM1A, YY1, ZBTB2, ZNF384, NEUROD1, ATF3, RUNX2, MYC, CTCFL, RAD21, HIF1A, GATA3, ZNF48, ZEB2, MGA, XRCC5, MAX, ZNF10, ZNF143, CDK8, RCOR1, HNRNPH1, ESRRA, TEAD3, NR2F2, ZMYM3, SMAD1, KDM5B, ZNF3, ESR1, L3MBTL2, CTCF, BCL11A, AR, ARID2, REST, E2F6, RNF2, CTBP2, MAZ, SMC1, SMC3, ZNF24, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): SETD4,RUNX1,SLC5A3,RCAN1,MRPS6,ATP5PO,SMIM11A,AP000311.1,ITSN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 57
- Number of somatic mutations (non-coding): 22
- Related genes and loops
- Related gene:
ENSG00000249209,
ENSG00000205726,
ENSG00000241837,
ENSG00000243927,
ENSG00000198743,
ENSG00000205670,
ENSG00000159200,
ENSG00000159216,
ENSG00000185917,
- Related loop:
chr21:14975000-15000000~~chr21:34500000-34525000,
chr21:32375000-32400000~~chr21:34500000-34525000,
chr21:33675000-33700000~~chr21:34500000-34525000,
chr21:33900000-33925000~~chr21:34500000-34525000,
chr21:33950000-33975000~~chr21:34500000-34525000,
chr21:34025000-34050000~~chr21:34500000-34525000,
chr21:34050000-34075000~~chr21:34500000-34525000,
chr21:34175000-34200000~~chr21:34500000-34525000,
chr21:34225000-34250000~~chr21:34500000-34525000,
chr21:34250000-34275000~~chr21:34500000-34525000,
chr21:34300000-34325000~~chr21:34500000-34525000,
chr21:34325000-34350000~~chr21:34500000-34525000,
chr21:34350000-34375000~~chr21:34500000-34525000,
chr21:34500000-34525000~~chr21:34600000-34625000,
chr21:34500000-34525000~~chr21:34625000-34650000,
chr21:34500000-34525000~~chr21:34850000-34875000,
chr21:34500000-34525000~~chr21:34875000-34900000,
chr21:34500000-34525000~~chr21:35025000-35050000,
chr21:34500000-34525000~~chr21:35600000-35625000,
chr21:34500000-34525000~~chr21:35825000-35850000,
chr21:34500000-34525000~~chr21:35925000-35950000,
chr21:34500000-34525000~~chr21:35950000-35975000,
chr21:34500000-34525000~~chr21:36025000-36050000,
chr21:34508569-34511502~~chr21:34543343-34545597,
chr21:34508611-34511592~~chr21:34582165-34583641,
chr21:34508611-34511592~~chr21:34602342-34604182,
chr21:34508615-34511741~~chr21:34581754-34584168,
chr21:34508615-34511741~~chr21:34602083-34604469,
chr21:34508615-34511741~~chr21:34629492-34631931,
chr21:34508625-34511759~~chr21:34602034-34604261,
chr21:34508630-34511686~~chr21:34581785-34584141,
chr21:34508630-34511686~~chr21:34602101-34604451,
chr21:34508630-34511686~~chr21:34629744-34631944,
chr21:34508642-34511774~~chr21:34602014-34604415,
chr21:34508649-34511612~~chr21:34581736-34583658,
chr21:34508649-34511612~~chr21:34602089-34603843,
chr21:34508650-34511829~~chr21:34581759-34584645,
chr21:34508650-34511829~~chr21:34601700-34604436,
chr21:34508652-34511719~~chr21:34581526-34583641,
chr21:34508652-34511719~~chr21:34601693-34604449,
chr21:34508655-34511778~~chr21:34581832-34584557,
chr21:34508655-34511778~~chr21:34601712-34604382,
chr21:34508655-34511778~~chr21:34629535-34631912,
chr21:34508676-34511542~~chr21:34582256-34583632,
chr21:34508676-34511542~~chr21:34602331-34604108,
chr21:34508680-34511707~~chr21:34581775-34584106,
chr21:34508680-34511707~~chr21:34602032-34604402,
chr21:34508680-34511707~~chr21:34629707-34631944,
chr21:34508685-34511696~~chr21:34602075-34604337,
chr21:34508686-34511802~~chr21:34581746-34584166,
chr21:34508686-34511802~~chr21:34601682-34604464,
chr21:34508701-34511712~~chr21:34601764-34604306,
chr21:34508705-34511720~~chr21:34581803-34583823,
chr21:34508705-34511720~~chr21:34602198-34604029,
chr21:34508719-34511659~~chr21:34581890-34583607,
chr21:34508750-34512867~~chr21:34543315-34545088,
chr21:34508750-34512867~~chr21:34582003-34583678,
chr21:34508750-34512867~~chr21:34602325-34604285,
chr21:34508753-34511486~~chr21:34582204-34583628,
chr21:34508753-34511486~~chr21:34602350-34604114,
chr21:34508768-34511838~~chr21:34602064-34604440,
chr21:34508793-34511654~~chr21:34543206-34545079,
chr21:34508793-34511654~~chr21:34581884-34584059,
chr21:34508793-34511654~~chr21:34602357-34604365,
chr21:34508793-34511654~~chr21:34614521-34616227,
chr21:34508793-34511654~~chr21:34629528-34631714,
chr21:34509466-34511758~~chr21:34582034-34583637,
chr21:34509466-34511758~~chr21:34602015-34604174,
chr21:34509521-34511696~~chr21:34581875-34583641,
chr21:34509540-34511703~~chr21:34543212-34545232,
chr21:34509540-34511703~~chr21:34581325-34584001,
chr21:34509540-34511703~~chr21:34601696-34604437,
chr21:34509547-34511623~~chr21:34601692-34604188,
chr21:34509547-34511623~~chr21:34629718-34631638,
chr21:34509573-34511708~~chr21:34581787-34584086,
chr21:34509573-34511708~~chr21:34602341-34603855,
chr21:34509741-34511700~~chr21:34582016-34584092,
chr21:34509752-34511516~~chr21:34582035-34584113,
chr21:34509783-34511605~~chr21:34602384-34603907,
chr21:34509872-34511601~~chr21:34582033-34583700,
chr21:34509887-34511738~~chr21:34581871-34583664,
chr21:34509908-34511636~~chr21:34602396-34603921,
chr21:34509916-34511507~~chr21:34543244-34545036,
chr21:34509928-34511624~~chr21:34602405-34603834,
chr21:34509944-34511541~~chr21:34582165-34583659,
chr21:34509944-34511541~~chr21:34602207-34604502,
chr21:34509944-34511541~~chr21:34629772-34631610,
chr21:34509968-34511655~~chr21:34602437-34604130,
chr21:34509993-34511503~~chr21:34582193-34583617,
chr21:34509993-34511503~~chr21:34602179-34603959,
chr21:34510017-34511458~~chr21:34602553-34604118,
chr21:34510017-34511489~~chr21:34602303-34604338,
chr21:34510026-34511585~~chr21:34602009-34603991,
chr21:34510042-34511475~~chr21:34602457-34604206,
chr21:34516834-34518581~~chr21:34581775-34584106,
chr21:34516916-34518686~~chr21:34581803-34583823,
chr21:34516916-34518686~~chr21:34602198-34604029,
chr21:34517019-34518429~~chr21:34582165-34583659,
chr21:34517021-34518393~~chr21:34543343-34545597,
chr21:34517056-34518483~~chr21:34581736-34583658,
chr21:34517122-34518298~~chr21:34543212-34545232,
chr21:7800000-7825000~~chr21:34500000-34525000,