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Basic information

CohesinDB ID: CDBP00417756

Locus: chr21-34548664-34549336

Data sourse: GSE62063, GSE67783, GSE111913, ENCSR153HNT

Cell type: K-562, RT-112, HSPC, Ramos

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.956

Subunit: NIPBL,SA1,SA2

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 93% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 55%, "5_TxWk": 38%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: FOSL1, MAFG, PPARG, FOXA2, ZFX, CTBP1, MEIS2, MAFF, ZBTB48, SMAD3, FOXA1, PBX2, YY1, RELA, JUNB, ATF3, MYC, NRF1, PROX1, NKX2-1, ZEB2, MGA, MAX, NRIP1, ZNF143, FOS, MITF, ZNF320, HNRNPH1, PLAG1, ZNF592, TFAP2C, NR2F1, ZNF3, ESR1, C11orf30, L3MBTL2, USF2, MYOD1, JUN, MAFK, USF1, MNT, BHLHE40, AR, E2F6, SOX6, RNF2, BRD4, JUND, MAZ, ZNF316

Target gene symbol (double-evidenced CRMs): SMIM11A,RCAN1,ATP5PO,ITSN1,RUNX1,AP000311.1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 4

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000249209, ENSG00000205726, ENSG00000241837, ENSG00000205670, ENSG00000159200, ENSG00000159216,

eachgene

Deatailed information for cohesin site CDBP00417756