- Basic information
- CohesinDB ID: CDBP00417759
- Locus: chr21-34555773-34556021
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Data sourse: ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
93% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 72%,
"5_TxWk": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF394, ZNF426, ZNF697, ZNF433, ZNF101, ZFP37, ZNF654, ZNF529, ZBTB21, ZBTB8A, ZNF266, ZFP64, SP3, PRDM12, ZNF781, ZNF518A, ZNF189, ZNF639, ZNF629, ZXDB, ZNF558, ZBTB11, ZNF680, ZNF560, ZNF213, ZNF292, ZNF140, ZNF577, ZNF664, ZNF202, REST, ZNF366, ZNF623, ZNF555, ZNF34
- Target gene symbol (double-evidenced CRMs): RCAN1,SMIM11A,RUNX1
- Function elements
- Human SNPs: Rheumatoid_arthritis
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 0
- Related genes and loops