- Basic information
- CohesinDB ID: CDBP00417769
- Locus: chr21-34575046-34575462
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Data sourse: GSE206145-NatGen2015, ENCSR153HNT, GSE86191
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Cell type: K-562, Fibroblast, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
93% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 52%,
"5_TxWk": 27%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PGR, CHD8, ZNF316, PPARG, TOP2A, ZFX, ZNF600, XBP1, ZNF692, WT1, ZSCAN5A, ZBTB48, SMAD3, FOXA1, PATZ1, ZNF770, DUX4, HOXB13, PRDM10, ZBTB21, RELA, CREBBP, ZNF35, CDK6, ZNF184, CHD7, RUNX3, TCF4, PBX4, HIF1A, OTX2, ATF2, STAT3, MAX, TP63, SPIB, NKX3-1, CDK8, IKZF1, RCOR1, MED1, ARNTL, CDX2, NR3C1, BCL11B, ZNF629, ZNF750, CEBPB, ZNF121, KLF4, SCRT2, PIAS1, KDM5B, LMO2, NR1H2, GRHL2, FEZF1, MYOD1, BRD2, JUN, CTCF, EP300, SPI1, BAF155, EHF, AR, KLF17, KLF1, RXR, GATA2, ZNF366, ATF7, BRD4, PHIP, TCF3, MAZ, ZNF554, RBPJ, EED
- Target gene symbol (double-evidenced CRMs): RCAN1,SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops