- Basic information
- CohesinDB ID: CDBP00417773
- Locus: chr21-34585472-34585807
-
Data sourse: GSE206145, GSE206145-NatGen2015, GSE111913, ENCSR153HNT
-
Cell type: K-562, Fibroblast, RT-112, RPE
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
93% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 86%,
"5_TxWk": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, AR, CREBBP, MEF2B, FOXA2, ETV1, PIAS1, RNF2, FOXA1, SPI1, ZNF334, DDX5, HOXB13, BAF155, ZNF318, ERG
- Target gene symbol (double-evidenced CRMs): SMIM11A,RCAN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 9
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000205670,
ENSG00000159200,
- Related loop:
chr21:34350000-34375000~~chr21:34575000-34600000,
chr21:34508611-34511592~~chr21:34582165-34583641,
chr21:34508615-34511741~~chr21:34581754-34584168,
chr21:34508630-34511686~~chr21:34581785-34584141,
chr21:34508649-34511612~~chr21:34581736-34583658,
chr21:34508650-34511829~~chr21:34581759-34584645,
chr21:34508652-34511719~~chr21:34581526-34583641,
chr21:34508655-34511778~~chr21:34581832-34584557,
chr21:34508676-34511542~~chr21:34582256-34583632,
chr21:34508680-34511707~~chr21:34581775-34584106,
chr21:34508686-34511802~~chr21:34581746-34584166,
chr21:34508705-34511720~~chr21:34581803-34583823,
chr21:34508719-34511659~~chr21:34581890-34583607,
chr21:34508750-34512867~~chr21:34582003-34583678,
chr21:34508753-34511486~~chr21:34582204-34583628,
chr21:34508793-34511654~~chr21:34581884-34584059,
chr21:34509466-34511758~~chr21:34582034-34583637,
chr21:34509521-34511696~~chr21:34581875-34583641,
chr21:34509540-34511703~~chr21:34581325-34584001,
chr21:34509573-34511708~~chr21:34581787-34584086,
chr21:34509741-34511700~~chr21:34582016-34584092,
chr21:34509752-34511516~~chr21:34582035-34584113,
chr21:34509872-34511601~~chr21:34582033-34583700,
chr21:34509887-34511738~~chr21:34581871-34583664,
chr21:34509944-34511541~~chr21:34582165-34583659,
chr21:34509993-34511503~~chr21:34582193-34583617,
chr21:34516834-34518581~~chr21:34581775-34584106,
chr21:34516916-34518686~~chr21:34581803-34583823,
chr21:34517019-34518429~~chr21:34582165-34583659,
chr21:34517056-34518483~~chr21:34581736-34583658,
chr21:34524254-34527736~~chr21:34581746-34584166,
chr21:7800000-7825000~~chr21:34575000-34600000,