- Basic information
- CohesinDB ID: CDBP00417776
- Locus: chr21-34593440-34593796
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Data sourse: ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
93% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 42%,
"7_Enh": 32%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: XBP1, FOXA1, PBX2, UBTF, ZFHX2, THAP1, CDX2, KLF5, TRIM28, ETV1, NFE2L2, CTCF, JUN, EP300, KLF1, BAF155, DPF2, TEAD4, GATAD2A, PDX1, ZSCAN5D, POU5F1, MYCN, ID3, CTBP1, ZNF317, ZBTB48, DUX4, STAT1, SAP130, ERG2, ASCL1, MYC, RAD21, FOXP2, GRHL3, RXRA, XRCC5, ZNF614, RCOR1, NFE2, HNRNPH1, NR3C1, CEBPB, HNRNPL, ZBTB11, TBL1XR1, PHF8, GATA2, ATF1, RUNX1, CTNNB1, BCL6, ZNF585A, HDAC1, LDB1, NKX2-2, CBX1, SOX13, ZFX, TET2, ERG3, SMARCC1, MEF2A, RARA, ZNF384, RUNX2, GATA4, ARNT, PRDM9, CBFA2T3, MED1, ZMYM3, SMAD1, KLF9, TBX5, RBM22, BCL11A, SP1, HNF4A, NKX2-5, ZBTB7A, RBM25, ATF7, HNRNPLL, BCOR, SMC3, STAG1, TRP47, KLF13, PPARG, CBX3, MTA3, CREM, FOXA2, SS18, WT1, FOXF1, ZNF823, KDM1A, YY1, RELA, NEUROD1, SP140, ZFP36, OTX2, TAL1, MAX, GATA1, GFI1B, NR2F2, PKNOX1, ZNF334, EGR2, BRD2, BHLHE40, AR, RXR, EGR1, ZBTB26, RNF2, MYNN, BRD4, ILF3, JUND, CLOCK, MAZ, MEF2D
- Target gene symbol (double-evidenced CRMs): SMIM11A,RCAN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 3
- Number of somatic mutations (non-coding): 0
- Related genes and loops