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Basic information

CohesinDB ID: CDBP00417787

Locus: chr21-34618035-34618756

Data sourse: GSE67783, ENCSR000BMY, ENCSR153HNT

Cell type: K-562, GM12878, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: SA1,Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: TSS

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 93% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "14_ReprPCWk": 39%, "15_Quies": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, POU2F2, CEBPA, CDK7, RUNX1T1, ZFX, XBP1, ZBTB48, MEF2C, CDK9, ERG, TFAP4, RELA, PBX1, NOTCH1, JUNB, NFKB2, MCM5, RUNX3, TCF4, BHLHE22, GATA3, PRDM9, GABPA, BATF, TAL1, FOXM1, IKZF1, CDK8, MED1, NR3C1, BCL11B, TRIM28, KMT2A, SCRT2, MYB, LMO2, ZIM3, NFKB1, STAT5A, TCF12, BCL11A, SPI1, LMO1, NR4A1, ZNF644, RNF2, SCRT1, BRD4, TCF3, NCOA2, EED

Target gene symbol (double-evidenced CRMs): SMIM11A,ATP5PO,AP000311.1,SLC5A3,IFNAR2,AP000295.1,RCAN1,ITSN1,RUNX1,MRPS6

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000249624, ENSG00000159110, ENSG00000249209, ENSG00000205726, ENSG00000241837, ENSG00000243927, ENSG00000198743, ENSG00000205670, ENSG00000159200, ENSG00000159216,

eachgene

Deatailed information for cohesin site CDBP00417787